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liftOver
•
reset
0
votes
0
replies
519
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
14 months ago
bonheur
• 0
2
votes
2
replies
1.5k
views
broken chain import in liftOver
lifto
liftOver
updated 24 months ago by
Marcel Ramos
700 • written 2.0 years ago by
james.dalgleish
• 0
2
votes
3
replies
1.6k
views
liftOver bug, reproducible
liftOver
rtracklayer
updated 3.3 years ago by
James W. MacDonald
66k • written 3.3 years ago by
Mikhail Dozmorov
▴ 30
0
votes
1
reply
1.3k
views
How to convert build 37 to build 38?
liftOver
updated 3.5 years ago by
shepherl
3.9k • written 3.5 years ago by
bluepebbles
• 0
0
votes
0
replies
847
views
liftOver (R-package) how to recognize the "#Partially deleted in new" in the result ???
liftOver
3.5 years ago
geneprophet
• 0
1
vote
3
replies
1.3k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 5.0 years ago by
James W. MacDonald
66k • written 5.0 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.3k
views
rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer
export.bw
liftover
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
ang
▴ 20
0
votes
1
reply
1.2k
views
rtracklayer::liftOver parameters (minMatch)
rtracklayer
liftOver
parameters
minMatch
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
Nik dAK
▴ 10
2
votes
3
replies
2.9k
views
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer
liftover
bioconductor
R
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
m.guelfi
• 0
0
votes
2
replies
1.7k
views
liftOver function in rtracklayer package is not working
liftover
rtracklayer
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
beausoleilmo
• 0
2
votes
10
replies
2.2k
views
Trouble Installing lifOver workflow
software error
liftOver
workflowinstall
package installation
updated 7.6 years ago by
James W. MacDonald
66k • written 7.6 years ago by
JustGettinStarted
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: ChAMP installation issue
by
Tahirah
• 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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mohammedtoufiq91
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Gordon Smyth
50k
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bas_work
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landenshanie
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