Showing : limmaGUI • reset
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Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 19.6 years ago by ★ 1.9k • written 19.6 years ago by 53k
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2
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1.2k
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Limma: background correction. Use or ignore?
limmaGUI limmaGUI
updated 19.6 years ago by 68k • written 19.6 years ago by ★ 1.9k
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1.1k
views
Request for users of limmaGUI, affylmGUI, JSM2005 or IBC2004 microarray course websites or my R-Tcl/Tk examples
affylmGUI limmaGUI affylmGUI limmaGUI
19.8 years ago James Wettenhall ▴ 1000
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1
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1.3k
views
Re-scaling MA plot Y axis in LimmaGUI?
GUI limma limmaGUI GUI limma limmaGUI
19.9 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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2
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1.6k
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limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
20.0 years ago Gordon Smyth 53k
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0
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1.2k
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limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
20.0 years ago Cecilia McGregor ▴ 110
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2
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2.7k
views
limma, spot and technical replicates
Genetics limma limmaGUI Genetics limma limmaGUI
updated 20.0 years ago by ▴ 150 • written 20.0 years ago by ▴ 110
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1
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1.2k
views
Analysing a timecourse/loop experiment without replication with limma
TimeCourse limma limmaGUI timecourse TimeCourse limma limmaGUI timecourse
updated 20.2 years ago by ★ 6.0k • written 20.2 years ago by ▴ 340
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3
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1.8k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
20.3 years ago Brooke-Powell, Elizabeth ▴ 170
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4
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1.4k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
updated 20.3 years ago by ▴ 170 • written 20.3 years ago by 53k
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0
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856
views
LimmaGUI Error
Normalization GO limmaGUI Normalization GO limmaGUI
20.3 years ago Brooke-Powell, Elizabeth ▴ 170
0
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3
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1.5k
views
spot filtering
limma limmaGUI limma limmaGUI
updated 20.3 years ago by ★ 3.4k • written 20.3 years ago by ▴ 170
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0
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1.1k
views
spot filtering
limma limmaGUI limma limmaGUI
20.3 years ago Gordon Smyth 53k
0
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0
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1.6k
views
NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
20.3 years ago Brooke-Powell, Elizabeth ▴ 170
0
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9
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2.6k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
20.3 years ago chris umbricht ▴ 110
0
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2
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1.2k
views
Fwd: Getting LimmaGUI to run
limmaGUI limmaGUI
updated 20.3 years ago by ▴ 40 • written 20.3 years ago by ▴ 110
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0
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694
views
Help with Duplicates
limmaGUI limmaGUI
20.5 years ago Brooke-Powell, Elizabeth ▴ 170
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4
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1.4k
views
LimmaGUI discards spots with no signal on one channel?
limma limmaGUI limma limmaGUI
20.6 years ago Gordon Smyth 53k
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0
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1.1k
views
MA plot (using fitted M values)
limmaGUI limmaGUI
20.6 years ago Choon Wei Wee ▴ 10
0
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0
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833
views
LimmaGUI discards spots with no signal on one channel??
limmaGUI limmaGUI
20.6 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
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1
reply
981
views
Bioconductor or R courses
GO limma limmaGUI GO limma limmaGUI
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 170
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0
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1.4k
views
Problem with limmaGui loading- "Tcl/Tk Extension(s) Not Found"
limmaGUI limmaGUI
20.6 years ago Noam Drigues ▴ 10
0
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1
reply
1.1k
views
problem in limmaGUI with Heat Diagram
limma limmaGUI limma limmaGUI
updated 20.9 years ago by ▴ 1000 • written 20.9 years ago by ▴ 50
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0
replies
975
views
Limma and limmaGUI with Imagene files, problems/bugs report
Normalization limma limmaGUI ASSIGN Normalization limma limmaGUI ASSIGN
20.9 years ago Breuk102 ▴ 50
0
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2
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1.2k
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 20.9 years ago by 53k • written 20.9 years ago by ▴ 50
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0
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666
views
Re: Bioconductor Digest, Vol 20, Issue 13
limma limmaGUI limma limmaGUI
21.1 years ago Gordon Smyth 53k
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0
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764
views
export limma html report in shell
limma limmaGUI limma limmaGUI
21.1 years ago Morten ▴ 300
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0
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1.2k
views
Re: LimmaGui on Mac OSX (version 10.3.5)
limmaGUI limmaGUI
21.2 years ago James Wettenhall ▴ 1000
0
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2
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1.1k
views
LimmaGUI Background corrections
limmaGUI limmaGUI
updated 21.2 years ago by 53k • written 21.2 years ago by ▴ 160
0
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1
reply
1.1k
views
LimmaGUI and limma
limma limmaGUI limma limmaGUI
updated 21.2 years ago by ▴ 1000 • written 21.2 years ago by ▴ 100
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0
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992
views
Re: limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
21.3 years ago Elizabeth Brooke-Powell ▴ 160
0
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1
reply
1.1k
views
limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
updated 21.3 years ago by ▴ 1000 • written 21.3 years ago by ▴ 30
0
votes
6
replies
1.9k
views
LimmaGUI Spot Quality
limmaGUI limmaGUI
updated 21.3 years ago by 53k • written 21.4 years ago by ▴ 160
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0
replies
1.1k
views
limmaGUI_1.2.5 ImaGene fix
limmaGUI limmaGUI
21.4 years ago James Wettenhall ▴ 1000
0
votes
2
replies
1.6k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 21.4 years ago by 53k • written 21.4 years ago by ▴ 50
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votes
2
replies
1.2k
views
Problem loading files into limmaGUI
limma limmaGUI limma limmaGUI
updated 21.4 years ago by 53k • written 21.4 years ago by ▴ 10
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1
reply
1.4k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
21.4 years ago James Wettenhall ▴ 1000
0
votes
0
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939
views
limmaGUI update
limma limmaGUI limma limmaGUI
21.4 years ago James Wettenhall ▴ 1000
0
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1
reply
1.0k
views
limmaGUI and dupcor.series error
limmaGUI limmaGUI
updated 21.4 years ago by ▴ 1000 • written 21.4 years ago by ▴ 760
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0
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1.0k
views
limmaGUI & affylmGUI new features/fixes
Genetics Normalization limmaGUI Genetics Normalization limmaGUI
21.4 years ago James Wettenhall ▴ 1000
0
votes
0
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1.3k
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
21.4 years ago James Wettenhall ▴ 1000
0
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0
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942
views
gcrma in affylmGUI
gcrma affylmGUI limmaGUI gcrma affylmGUI limmaGUI
21.4 years ago James Wettenhall ▴ 1000
0
votes
2
replies
1.0k
views
gcrma in affylmGUI
gcrma limmaGUI gcrma limmaGUI
updated 21.4 years ago by ▴ 1000 • written 21.5 years ago by ▴ 90
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0
replies
1.2k
views
limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
21.4 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.0k
views
Re: limmaGUI problem
limmaGUI limmaGUI
21.6 years ago James Wettenhall ▴ 1000
0
votes
0
replies
961
views
limmaGUI problem
limma limmaGUI limma limmaGUI
21.6 years ago Ron Ophir ▴ 80
0
votes
0
replies
1.3k
views
Re: LimmaGUI
Genetics limma limmaGUI Genetics limma limmaGUI
21.7 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.2k
views
LimmaGUI
limmaGUI limmaGUI
updated 21.7 years ago by 68k • written 21.7 years ago by ▴ 100
0
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0
replies
1.4k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
21.9 years ago James Wettenhall ▴ 1000
0
votes
0
replies
831
views
How to do normalization without backgroundsubtraction in limmaGUI or limma?
Normalization limma limmaGUI Normalization limma limmaGUI
22.1 years ago ying chen ▴ 30
105 results • Page 2 of 3
Recent ...
Replies
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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