Showing : limmaGUI • reset
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Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 19.8 years ago by ★ 1.9k • written 19.8 years ago by 53k
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2
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1.3k
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Limma: background correction. Use or ignore?
limmaGUI limmaGUI
updated 19.8 years ago by 68k • written 19.8 years ago by ★ 1.9k
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Request for users of limmaGUI, affylmGUI, JSM2005 or IBC2004 microarray course websites or my R-Tcl/Tk examples
affylmGUI limmaGUI affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
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1
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1.3k
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Re-scaling MA plot Y axis in LimmaGUI?
GUI limma limmaGUI GUI limma limmaGUI
20.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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2
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1.7k
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limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
20.1 years ago Gordon Smyth 53k
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limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
20.2 years ago Cecilia McGregor ▴ 110
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2
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2.7k
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limma, spot and technical replicates
Genetics limma limmaGUI Genetics limma limmaGUI
updated 20.2 years ago by ▴ 150 • written 20.2 years ago by ▴ 110
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1
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1.3k
views
Analysing a timecourse/loop experiment without replication with limma
TimeCourse limma limmaGUI timecourse TimeCourse limma limmaGUI timecourse
updated 20.4 years ago by ★ 6.0k • written 20.4 years ago by ▴ 340
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3
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1.8k
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LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
20.5 years ago Brooke-Powell, Elizabeth ▴ 170
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4
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1.5k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
updated 20.5 years ago by ▴ 170 • written 20.5 years ago by 53k
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872
views
LimmaGUI Error
Normalization GO limmaGUI Normalization GO limmaGUI
20.5 years ago Brooke-Powell, Elizabeth ▴ 170
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3
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1.5k
views
spot filtering
limma limmaGUI limma limmaGUI
updated 20.5 years ago by ★ 3.4k • written 20.5 years ago by ▴ 170
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1.1k
views
spot filtering
limma limmaGUI limma limmaGUI
20.5 years ago Gordon Smyth 53k
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0
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1.6k
views
NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
20.5 years ago Brooke-Powell, Elizabeth ▴ 170
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9
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2.7k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
20.5 years ago chris umbricht ▴ 110
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2
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1.2k
views
Fwd: Getting LimmaGUI to run
limmaGUI limmaGUI
updated 20.5 years ago by ▴ 40 • written 20.5 years ago by ▴ 110
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717
views
Help with Duplicates
limmaGUI limmaGUI
20.7 years ago Brooke-Powell, Elizabeth ▴ 170
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4
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1.4k
views
LimmaGUI discards spots with no signal on one channel?
limma limmaGUI limma limmaGUI
20.8 years ago • updated 20.7 years ago Gordon Smyth 53k
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0
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1.1k
views
MA plot (using fitted M values)
limmaGUI limmaGUI
20.8 years ago Choon Wei Wee ▴ 10
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855
views
LimmaGUI discards spots with no signal on one channel??
limmaGUI limmaGUI
20.8 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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1
reply
1.0k
views
Bioconductor or R courses
GO limma limmaGUI GO limma limmaGUI
updated 20.8 years ago by ★ 7.4k • written 20.8 years ago by ▴ 170
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0
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1.5k
views
Problem with limmaGui loading- "Tcl/Tk Extension(s) Not Found"
limmaGUI limmaGUI
20.8 years ago Noam Drigues ▴ 10
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1
reply
1.2k
views
problem in limmaGUI with Heat Diagram
limma limmaGUI limma limmaGUI
updated 21.1 years ago by ▴ 1000 • written 21.1 years ago by ▴ 50
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0
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1.0k
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Limma and limmaGUI with Imagene files, problems/bugs report
Normalization limma limmaGUI ASSIGN Normalization limma limmaGUI ASSIGN
21.1 years ago Breuk102 ▴ 50
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2
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1.3k
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 21.1 years ago by 53k • written 21.1 years ago by ▴ 50
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688
views
Re: Bioconductor Digest, Vol 20, Issue 13
limma limmaGUI limma limmaGUI
21.3 years ago Gordon Smyth 53k
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781
views
export limma html report in shell
limma limmaGUI limma limmaGUI
21.3 years ago Morten ▴ 300
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1.2k
views
Re: LimmaGui on Mac OSX (version 10.3.5)
limmaGUI limmaGUI
21.3 years ago James Wettenhall ▴ 1000
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2
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1.1k
views
LimmaGUI Background corrections
limmaGUI limmaGUI
updated 21.3 years ago by 53k • written 21.4 years ago by ▴ 160
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1
reply
1.1k
views
LimmaGUI and limma
limma limmaGUI limma limmaGUI
updated 21.4 years ago by ▴ 1000 • written 21.4 years ago by ▴ 100
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0
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1.0k
views
Re: limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
21.5 years ago Elizabeth Brooke-Powell ▴ 160
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1
reply
1.2k
views
limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
updated 21.5 years ago by ▴ 1000 • written 21.5 years ago by ▴ 30
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6
replies
1.9k
views
LimmaGUI Spot Quality
limmaGUI limmaGUI
updated 21.5 years ago by 53k • written 21.5 years ago by ▴ 160
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0
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1.1k
views
limmaGUI_1.2.5 ImaGene fix
limmaGUI limmaGUI
21.5 years ago James Wettenhall ▴ 1000
0
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2
replies
1.7k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 21.5 years ago by 53k • written 21.5 years ago by ▴ 50
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2
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1.2k
views
Problem loading files into limmaGUI
limma limmaGUI limma limmaGUI
updated 21.6 years ago by 53k • written 21.6 years ago by ▴ 10
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1
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1.4k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
21.6 years ago James Wettenhall ▴ 1000
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0
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965
views
limmaGUI update
limma limmaGUI limma limmaGUI
21.6 years ago James Wettenhall ▴ 1000
0
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1
reply
1.1k
views
limmaGUI and dupcor.series error
limmaGUI limmaGUI
updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 760
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1.0k
views
limmaGUI & affylmGUI new features/fixes
Genetics Normalization limmaGUI Genetics Normalization limmaGUI
21.6 years ago James Wettenhall ▴ 1000
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0
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1.3k
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
21.6 years ago James Wettenhall ▴ 1000
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982
views
gcrma in affylmGUI
gcrma affylmGUI limmaGUI gcrma affylmGUI limmaGUI
21.6 years ago James Wettenhall ▴ 1000
0
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2
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1.1k
views
gcrma in affylmGUI
gcrma limmaGUI gcrma limmaGUI
updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 90
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0
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1.2k
views
limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
21.6 years ago James Wettenhall ▴ 1000
0
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1
reply
1.0k
views
Re: limmaGUI problem
limmaGUI limmaGUI
21.8 years ago James Wettenhall ▴ 1000
0
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0
replies
980
views
limmaGUI problem
limma limmaGUI limma limmaGUI
21.8 years ago Ron Ophir ▴ 80
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0
replies
1.3k
views
Re: LimmaGUI
Genetics limma limmaGUI Genetics limma limmaGUI
21.9 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.2k
views
LimmaGUI
limmaGUI limmaGUI
updated 21.9 years ago by 68k • written 21.9 years ago by ▴ 100
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0
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1.4k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
22.1 years ago James Wettenhall ▴ 1000
0
votes
0
replies
855
views
How to do normalization without backgroundsubtraction in limmaGUI or limma?
Normalization limma limmaGUI Normalization limma limmaGUI
22.2 years ago ying chen ▴ 30
105 results • Page 2 of 3
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
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