Bioconductor Lipidomics

Showing : lipidomics • reset

votes

replies

123

views

Normalization Lipidomics lipidr

5 weeks ago David R ▴ 90

vote

replies

2.0k

views

Lipidomics Metabolomics limma Normalization

3.5 years ago pgugger ▴ 70

votes

replies

646

views

Lipidomics lipidr lipi

4.1 years ago eme • 0

vote

replies

999

views

metabolomics lipidomics clinical research data integration biostatistics Job

4.9 years ago Tommi Suvitaival ▴ 10

votes

replies

1.4k

views

shotgun lipidomics lipidomics mass spectrometry

8.9 years ago Titan • 0

vote

replies

2.8k

views

xcms metabolomics massspectrometry lipidomics bioconductor

9.0 years ago • updated 8.9 years ago Titan • 0

votes

replies

2.4k

views

xcms metabolomics lipidomics proteomics massspectrometry

9.0 years ago Titan • 0

votes

replies

3.2k

views

xcms metabolomics lipidomics statistics

9.0 years ago Titan • 0

votes

replies

1.5k

views

Lipidomics Lipidomics

15.2 years ago Michael Eiden ▴ 10

9 results • Page 1 of 1

Recent ...

Replies

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

Awards • All