Showing : lipidomics • reset
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DESeq use in lipidomic analysis
DESeq2 package Lipidomics
updated 9 months ago by 43k • written 9 months ago by • 0
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
Normalization Lipidomics lipidr
12 months ago David R ▴ 90
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Normalization of metabolomics/lipidomics data for limma
Lipidomics Metabolomics limma Normalization
4.4 years ago pgugger ▴ 70
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when to use filter_by_cv() function from the lipidr package
Lipidomics lipidr lipi
5.1 years ago eme • 0
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1.2k
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Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics lipidomics clinical research data integration biostatistics Job
5.8 years ago Tommi Suvitaival ▴ 10
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Shotgun lipidomics analysis
shotgun lipidomics lipidomics mass spectrometry
9.9 years ago Titan • 0
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3
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3.1k
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XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
9.9 years ago Titan • 0
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3
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2.7k
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Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
9.9 years ago Titan • 0
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4
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3.7k
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XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
9.9 years ago Titan • 0
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1.7k
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Bioinformatics position available in lipidomics biomarker research
Lipidomics Lipidomics
16.1 years ago Michael Eiden ▴ 10
10 results • Page 1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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