Showing : lmFit • reset
4
votes
3
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4.7k
views
p-values from robust linear model in LIMMA
limma lmFit
updated 9.4 years ago by 50k • written 9.9 years ago by ▴ 40
2
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5
replies
4.2k
views
Analysis using a linear model
lmfit
updated 8.5 years ago by 50k • written 8.5 years ago by • 0
3
votes
6
replies
2.4k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 10
2
votes
2
replies
2.4k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 10
2
votes
5
replies
2.4k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 6.7 years ago by 50k • written 6.7 years ago by ▴ 10
2
votes
8
replies
2.2k
views
lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 9.4 years ago by 50k • written 13.1 years ago by ▴ 210
4
votes
8
replies
1.8k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 7.5 years ago by ★ 7.9k • written 7.5 years ago by • 0
2
votes
3
replies
1.7k
views
Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
6.6 years ago stinehedensted • 0
1
vote
8
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1.6k
views
Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 5.8 years ago by ★ 28k • written 5.8 years ago by • 0
1
vote
7
replies
1.6k
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
6.2 years ago darthratus • 0
2
votes
4
replies
1.6k
views
Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 7.8 years ago by 50k • written 7.8 years ago by • 0
1
vote
5
replies
1.4k
views
Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 4.1 years ago by 50k • written 4.1 years ago by • 0
0
votes
2
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1.3k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.5 years ago by 50k • written 7.5 years ago by ▴ 10
2
votes
3
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1.3k
views
lmFit, continuous exposure, adjustment covariates
lmFit
updated 24 months ago by 50k • written 2.9 years ago by • 0
0
votes
3
replies
1.2k
views
Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
7.2 years ago stephane.cauchi ▴ 10
2
votes
2
replies
1.1k
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 10
3
votes
4
replies
1.1k
views
lmFit, number of proteins
lmFit
3.0 years ago • updated 2.9 years ago AyHi • 0
1
vote
1
reply
911
views
Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
limma lmfit R DifferentialExpression
updated 23 months ago by ★ 4.1k • written 23 months ago by • 0
2
votes
2
replies
901
views
design matrix and correlate variable
limma lmfit
updated 5.0 years ago by ★ 28k • written 5.0 years ago by ▴ 10
0
votes
0
replies
768
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
2.9 years ago kyleyxw • 0
4
votes
6
replies
723
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mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 4.1 years ago by 65k • written 4.1 years ago by • 0
21 results • Page 1 of 1
Recent ...
Replies
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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