Bioconductor Lmfit

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1.8k

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limma illumina450k lmfit

updated 7.5 years ago by Ryan C. Thompson ★ 7.9k • written 7.5 years ago by DSP • 0

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1.6k

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limma lmfit design matrix r

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by anupriya.dalmia • 0

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2.2k

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limma lmFit

updated 9.3 years ago by Gordon Smyth 50k • written 13.1 years ago by Peter Davidsen ▴ 210

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1.6k

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model.matrix lmFit eBayes GEOquery limma

6.2 years ago darthratus • 0

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712

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limma lmFit mean expression level

updated 4.1 years ago by James W. MacDonald 65k • written 4.1 years ago by anna • 0

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limma illumina microarray lmfit differential gene expression

updated 8.7 years ago by James W. MacDonald 65k • written 8.7 years ago by kanacska ▴ 10

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4.1k

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lmfit

updated 8.4 years ago by Gordon Smyth 50k • written 8.4 years ago by libya.tahani • 0

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limma voom lmfit ebayesfit

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by sa825 • 0

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2.4k

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limma contrast missing data lmfit makecontrasts

updated 6.6 years ago by Gordon Smyth 50k • written 6.7 years ago by wewolski ▴ 10

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1.1k

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lmFit

3.0 years ago • updated 2.8 years ago AyHi • 0

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1.6k

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limma agilent microarrays lmfit

updated 7.8 years ago by Gordon Smyth 50k • written 7.8 years ago by Jesse L. • 0

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1.7k

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limma lmfit model.matrix differential gene expression

6.6 years ago stinehedensted • 0

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limma lmfit weight individual

7.1 years ago stephane.cauchi ▴ 10

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1.3k

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lmFit

updated 23 months ago by Gordon Smyth 50k • written 2.8 years ago by AyHi • 0

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limma lmFit

updated 9.3 years ago by Gordon Smyth 50k • written 9.9 years ago by Arvid Sondén ▴ 40

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limma agilent microarray lmfit model.matrix

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by Maximilian ▴ 10

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2.4k

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limma logfc lmfit

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by Moritz E. Beber ▴ 10

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limma lmfit voom limma design matrix voomwithqualityweights

updated 5.3 years ago by Gordon Smyth 50k • written 5.4 years ago by kediggins ▴ 10

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889

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limma lmfit

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by mouton.alice ▴ 10

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894

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limma lmfit R DifferentialExpression

updated 23 months ago by ATpoint ★ 4.0k • written 23 months ago by Dimitris • 0

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757

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minfi limma lmm lmfit dmpFinder

2.9 years ago kyleyxw • 0

21 results • Page 1 of 1

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Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length