Showing : lncrna • reset
2
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I would like to perform differential expression analysis of lncRNAs using DESeq2 and edgeR.
diffGeneAnalysis lncRNA
4 months ago John ▴ 10
0
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0
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635
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how to convert lncRNA probe name or mRNA probe name to gene symbol
lncRNA probeID mRNA genesymbol
2.8 years ago Sooni ▴ 10
3
votes
3
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2.0k
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Recount data for unannotated genes
recount RNAseq gencode lncRNA gene annotation
updated 6.6 years ago by ▴ 70 • written 6.7 years ago by ▴ 20
0
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1
reply
2.0k
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TPM and FPKM for lncRNA
GenomicFeatures TPM FPKM lncRNA
7.5 years ago Ina Hoeschele ▴ 620
0
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2
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4.1k
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lncRNA annotation for featureCouns and STAR
lncRNA featureCounts STAR annotation
updated 7.5 years ago by ★ 3.6k • written 7.5 years ago by ▴ 10
0
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2
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1.9k
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R packages for differential expression analysis of raw data from arraystar microarrays
microarray lncrna microrna mrna raw data
updated 8.0 years ago by ★ 1.1k • written 8.0 years ago by • 0
0
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3
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3.8k
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Annotation DB for ArrayStar lncRNA arrays
arraystar lncRNA annotation annotationdbi
updated 10.2 years ago by • 0 • written 10.7 years ago by ▴ 430
7 results • Page 1 of 1
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Comment: Bioconductor 3.22 Release Schedule by loganlstevens • 0
This release reminds me of the strategies in [solitaired](https://solitaired.io) to overcome live solitaires.
Answer: Create consensusMatrix for codon bases by Kevin Blighe ★ 4.0k
To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: sigDF object in sesame by Kevin Blighe ★ 4.0k
Your interpretation of the column headers in the SigDF object is correct: MG corresponds to the methylated signal intensity in the green ch…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
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Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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