Showing : lpe • reset
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PLPE error
Microarray affy LPE PLPE Microarray affy LPE PLPE
16.9 years ago Dennis.Burian@faa.gov ▴ 90
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 17.1 years ago by ▴ 70 • written 17.1 years ago by ★ 13k
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2
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE Cancer gcrma LPE
updated 17.1 years ago by ★ 1.6k • written 17.1 years ago by ▴ 70
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3
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2.1k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.2 years ago • updated 17.1 years ago Patrick Aboyoun ★ 1.6k
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A friendly mention of LPE package
LPE LPE
17.8 years ago pingzhao Hu ▴ 210
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3
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3.1k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.8 years ago McGee, Monnie ▴ 300
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1.1k
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LPE question
LPE LPE
19.8 years ago Jain, Nitin ▴ 70
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incoherence with LPE
LPE LPE
20.3 years ago Jain, Nitin ▴ 70
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1.1k
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LPE method based on RMA vs. MAS5
Preprocessing LPE Preprocessing LPE
20.3 years ago Jain, Nitin ▴ 70
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1.1k
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pools and tech rep
limma LPE limma LPE
20.5 years ago Ariel Chernomoretz ▴ 380
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1
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1.2k
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FDR adjustment in LPE
LPE LPE
updated 20.6 years ago by ▴ 70 • written 20.6 years ago by ▴ 40
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1
reply
1.2k
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local pooled error
LPE LPE
updated 20.7 years ago by ▴ 210 • written 20.7 years ago by ★ 1.3k
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.8 years ago Jain, Nitin ▴ 70
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1
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1.4k
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Help with LPE error message
LPE LPE
updated 20.8 years ago by ▴ 70 • written 20.8 years ago by ▴ 140
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.8 years ago Harry Hurd ▴ 60
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1
reply
1.4k
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LPE errors
LPE LPE
updated 21.1 years ago by ▴ 70 • written 21.1 years ago by ▴ 40
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1.2k
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LPE error and warnings
LPE LPE
21.1 years ago Stephanie Mewborn ▴ 40
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1
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problem with LPE
LPE LPE
updated 21.8 years ago by ▴ 30 • written 21.8 years ago by ▴ 720
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7
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2.3k
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
21.8 years ago Matthew Hannah ▴ 940
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Limma or something else ? plus Normalization question
Normalization affy limma LPE PROcess Normalization affy limma LPE PROcess
22.2 years ago Gordon Smyth 53k
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1
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1.2k
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Limma or something else ? plus Normalization question
limma LPE PROcess limma LPE PROcess
updated 22.2 years ago by 53k • written 22.2 years ago by ▴ 720
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question about RMA and filtering
affy LPE affy LPE
22.4 years ago Phguardiol@aol.com ▴ 720
22 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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