Showing : lpe • reset
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PLPE error
Microarray affy LPE PLPE Microarray affy LPE PLPE
16.7 years ago Dennis.Burian@faa.gov ▴ 90
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3.5k
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 17.0 years ago by ▴ 70 • written 17.0 years ago by ★ 13k
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2
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE Cancer gcrma LPE
updated 17.0 years ago by ★ 1.6k • written 17.0 years ago by ▴ 70
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3
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.0 years ago Patrick Aboyoun ★ 1.6k
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A friendly mention of LPE package
LPE LPE
17.6 years ago pingzhao Hu ▴ 210
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3
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3.0k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.7 years ago McGee, Monnie ▴ 300
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1.1k
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LPE question
LPE LPE
19.7 years ago Jain, Nitin ▴ 70
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incoherence with LPE
LPE LPE
20.1 years ago Jain, Nitin ▴ 70
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LPE method based on RMA vs. MAS5
Preprocessing LPE Preprocessing LPE
20.1 years ago Jain, Nitin ▴ 70
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1.0k
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pools and tech rep
limma LPE limma LPE
20.3 years ago Ariel Chernomoretz ▴ 380
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1
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1.2k
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FDR adjustment in LPE
LPE LPE
updated 20.4 years ago by ▴ 70 • written 20.4 years ago by ▴ 40
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1
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1.2k
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local pooled error
LPE LPE
updated 20.5 years ago by ▴ 210 • written 20.5 years ago by ★ 1.3k
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.6 years ago Jain, Nitin ▴ 70
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1
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1.4k
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Help with LPE error message
LPE LPE
updated 20.6 years ago by ▴ 70 • written 20.6 years ago by ▴ 140
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.7 years ago Harry Hurd ▴ 60
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1
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1.3k
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LPE errors
LPE LPE
updated 20.9 years ago by ▴ 70 • written 20.9 years ago by ▴ 40
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1.2k
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LPE error and warnings
LPE LPE
20.9 years ago Stephanie Mewborn ▴ 40
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1
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1.5k
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problem with LPE
LPE LPE
updated 21.7 years ago by ▴ 30 • written 21.7 years ago by ▴ 720
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7
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2.2k
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
21.7 years ago Matthew Hannah ▴ 940
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Limma or something else ? plus Normalization question
Normalization affy limma LPE PROcess Normalization affy limma LPE PROcess
22.1 years ago Gordon Smyth 53k
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1
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Limma or something else ? plus Normalization question
limma LPE PROcess limma LPE PROcess
updated 22.1 years ago by 53k • written 22.1 years ago by ▴ 720
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question about RMA and filtering
affy LPE affy LPE
22.3 years ago Phguardiol@aol.com ▴ 720
22 results • Page 1 of 1
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Comment: gene Set with high AUC score but no cells assigned to cell type by eja.hdrer33ge.r.m • 0
Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…
Votes
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
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