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lpe
•
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0
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0
replies
1.0k
views
PLPE error
Microarray
affy
LPE
PLPE
Microarray
affy
LPE
PLPE
15.9 years ago
Dennis.Burian@faa.gov
▴ 90
0
votes
18
replies
2.8k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer
gcrma
LPE
affylmGUI
Cancer
gcrma
LPE
affylmGUI
updated 16.1 years ago by
Charlie Whittaker
▴ 70 • written 16.1 years ago by
Wolfgang Huber
★ 13k
0
votes
2
replies
1.2k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer
gcrma
LPE
Cancer
gcrma
LPE
updated 16.2 years ago by
Patrick Aboyoun
★ 1.6k • written 16.2 years ago by
Charlie Whittaker
▴ 70
0
votes
3
replies
1.8k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
16.2 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
895
views
A friendly mention of LPE package
LPE
LPE
16.8 years ago
pingzhao Hu
▴ 210
0
votes
3
replies
2.8k
views
Inherits(x,"data.frame") error in SamR
Microarray
Normalization
Preprocessing
Bayesian
Clustering
TimeCourse
Cancer
affy
vsn
LPE
18.9 years ago
McGee, Monnie
▴ 300
0
votes
0
replies
964
views
LPE question
LPE
LPE
18.9 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
1.0k
views
incoherence with LPE
LPE
LPE
19.3 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
993
views
LPE method based on RMA vs. MAS5
Preprocessing
LPE
Preprocessing
LPE
19.3 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
931
views
pools and tech rep
limma
LPE
limma
LPE
19.5 years ago
Ariel Chernomoretz
▴ 380
0
votes
1
reply
1.1k
views
FDR adjustment in LPE
LPE
LPE
updated 19.6 years ago by
Jain, Nitin
▴ 70 • written 19.6 years ago by
jean-louis.ruelle@gskbio.com
▴ 40
0
votes
1
reply
1.1k
views
local pooled error
LPE
LPE
updated 19.7 years ago by
A.J. Rossini
▴ 210 • written 19.7 years ago by
Lana Schaffer
★ 1.3k
0
votes
0
replies
968
views
LPE
cdf
affy
LPE
ASSIGN
cdf
affy
LPE
ASSIGN
19.8 years ago
Jain, Nitin
▴ 70
0
votes
1
reply
1.2k
views
Help with LPE error message
LPE
LPE
updated 19.8 years ago by
Jain, Nitin
▴ 70 • written 19.8 years ago by
Puhong Gao
▴ 140
0
votes
0
replies
906
views
LPE
cdf
affy
LPE
ASSIGN
cdf
affy
LPE
ASSIGN
19.8 years ago
Harry Hurd
▴ 60
0
votes
1
reply
1.2k
views
LPE errors
LPE
LPE
updated 20.1 years ago by
Jain, Nitin
▴ 70 • written 20.1 years ago by
Stephanie Mewborn
▴ 40
0
votes
0
replies
1.1k
views
LPE error and warnings
LPE
LPE
20.1 years ago
Stephanie Mewborn
▴ 40
0
votes
1
reply
1.4k
views
problem with LPE
LPE
LPE
updated 20.8 years ago by
Nitin Jain
▴ 30 • written 20.8 years ago by
Phguardiol@aol.com
▴ 720
0
votes
7
replies
1.9k
views
Statistical comparison of low replicate affy data
affy
gcrma
siggenes
LPE
affy
gcrma
siggenes
LPE
20.9 years ago
Matthew Hannah
▴ 940
0
votes
0
replies
1.1k
views
Limma or something else ? plus Normalization question
Normalization
affy
limma
LPE
PROcess
Normalization
affy
limma
LPE
PROcess
21.2 years ago
Gordon Smyth
52k
0
votes
1
reply
1.1k
views
Limma or something else ? plus Normalization question
limma
LPE
PROcess
limma
LPE
PROcess
updated 21.2 years ago by
Gordon Smyth
52k • written 21.2 years ago by
Phguardiol@aol.com
▴ 720
0
votes
0
replies
994
views
question about RMA and filtering
affy
LPE
affy
LPE
21.5 years ago
Phguardiol@aol.com
▴ 720
22 results • Page
1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
• 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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Ali Barry
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gabriel.hoffman
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Jenny Drnevich
★ 2.0k
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martin.grigorov
▴ 10
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James W. MacDonald
67k
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