Showing : lpe • reset
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PLPE error
Microarray affy LPE PLPE Microarray affy LPE PLPE
16.9 years ago Dennis.Burian@faa.gov ▴ 90
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 17.1 years ago by ▴ 70 • written 17.1 years ago by ★ 13k
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE Cancer gcrma LPE
updated 17.1 years ago by ★ 1.6k • written 17.1 years ago by ▴ 70
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.1 years ago Patrick Aboyoun ★ 1.6k
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A friendly mention of LPE package
LPE LPE
17.8 years ago pingzhao Hu ▴ 210
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3
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3.1k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.8 years ago McGee, Monnie ▴ 300
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LPE question
LPE LPE
19.8 years ago Jain, Nitin ▴ 70
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incoherence with LPE
LPE LPE
20.2 years ago Jain, Nitin ▴ 70
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LPE method based on RMA vs. MAS5
Preprocessing LPE Preprocessing LPE
20.2 years ago Jain, Nitin ▴ 70
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pools and tech rep
limma LPE limma LPE
20.5 years ago Ariel Chernomoretz ▴ 380
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1
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1.2k
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FDR adjustment in LPE
LPE LPE
updated 20.5 years ago by ▴ 70 • written 20.5 years ago by ▴ 40
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1
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local pooled error
LPE LPE
updated 20.6 years ago by ▴ 210 • written 20.6 years ago by ★ 1.3k
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.7 years ago Jain, Nitin ▴ 70
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1
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1.4k
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Help with LPE error message
LPE LPE
updated 20.7 years ago by ▴ 70 • written 20.7 years ago by ▴ 140
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995
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.8 years ago Harry Hurd ▴ 60
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1
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1.3k
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LPE errors
LPE LPE
updated 21.0 years ago by ▴ 70 • written 21.0 years ago by ▴ 40
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1.2k
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LPE error and warnings
LPE LPE
21.0 years ago Stephanie Mewborn ▴ 40
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1
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1.5k
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problem with LPE
LPE LPE
updated 21.8 years ago by ▴ 30 • written 21.8 years ago by ▴ 720
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2.3k
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
21.8 years ago Matthew Hannah ▴ 940
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Limma or something else ? plus Normalization question
Normalization affy limma LPE PROcess Normalization affy limma LPE PROcess
22.2 years ago Gordon Smyth 53k
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1
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Limma or something else ? plus Normalization question
limma LPE PROcess limma LPE PROcess
updated 22.2 years ago by 53k • written 22.2 years ago by ▴ 720
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question about RMA and filtering
affy LPE affy LPE
22.4 years ago Phguardiol@aol.com ▴ 720
22 results • Page 1 of 1
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Replies
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Scholar to Gordon Smyth 53k
Popular Question to shepherl 4.2k
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