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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 830
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Cannot specify probability function for extraTrees model in caret package
caret extraTrees machinelearning
8.9 years ago liuy12 • 0
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
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Machine learning methods for feature selection and possible correlation with clinical data
machinelearning clinicaldata biomarkers data integration bioconductor
9.0 years ago svlachavas ▴ 830
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Job: Group Leader (Machine Learning/AI), Centre for Molecular Medicine, University of Oslo
Biology AI Machinelearning Precisionmedicine Norway
2.2 years ago delete • 0
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738
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Job: Job as a bioinformatician in Hamburg, Germany
DimensionReduction SingleCellData multiomics MachineLearning
16 months ago Diego's • 0
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
16 months ago alena.vanboemmel • 0
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Hierarchical Random Forest classifier
rnaseq machinelearning random forest mlseq
8.3 years ago anthony.hawkins ▴ 10
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Error in R package "cancerclass" with function nvalidate
cancerclass bioconductor machinelearning classification
9.0 years ago svlachavas ▴ 830
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Job: Graduate Student in Cancer Genomics / Machine Learning Brigham Young University
machinelearning cancer Job
8.4 years ago Stephen Piccolo ▴ 590
10 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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