Showing : makeTxDbFromGFF • reset
2
votes
2
replies
1.5k
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
2.2 years ago stacy.genovese • 0
3
votes
4
replies
3.7k
views
Saving and retrieving TxDB object
makeTxDBFromGFF EISA
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
0
votes
0
replies
1.8k
views
error with makeTxDbFromGFF
genomicfeatures gff custom genome makeTxDbFromGFF makeTxDbFromGRanges
6.0 years ago xvazquezc • 0
0
votes
1
reply
1.5k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
6.5 years ago csijcs • 0
0
votes
2
replies
2.7k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff limma
updated 6.5 years ago by 16k • written 6.6 years ago by ▴ 20
0
votes
1
reply
1.7k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures txdb maketxdbfromgff
updated 6.8 years ago by ▴ 50 • written 6.8 years ago by • 0
0
votes
0
replies
1.1k
views
Error using the makeTxDbFromGFF
maketxdbfromgff
7.2 years ago bright602 • 0
0
votes
1
reply
4.4k
views
create a txdb using makeTxDbFromGFF
bioconductor txdb maketxdbfromgff
7.4 years ago Nader.Aryamanesh • 0
0
votes
3
replies
4.3k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures granges maketxdbfromgff
updated 7.7 years ago by 16k • written 7.8 years ago by • 0
1
vote
2
replies
1.3k
views
Error while using GenomicFeatures package
genomicfeatures maketxdbfromgff
updated 8.2 years ago by 16k • written 8.2 years ago by ▴ 10
3
votes
2
replies
2.6k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures gtf maketxdbfromgff iGenome
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 20
1
vote
2
replies
1.6k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff genomicfeatures
updated 9.0 years ago by 16k • written 9.0 years ago by ▴ 80
4
votes
2
replies
1.6k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures txdb maketxdbfromgff metadata
updated 9.0 years ago by ★ 6.8k • written 9.0 years ago by ▴ 80
0
votes
5
replies
2.0k
views
makeTxDbFromGFF returns empty object
genomicfeatures txdb maketxdbfromgff
9.0 years ago TimothéeFlutre ▴ 80
0
votes
0
replies
1.1k
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
9.2 years ago Udi Landau ▴ 30
8
votes
7
replies
4.2k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 9.3 years ago by 16k • written 9.3 years ago by ▴ 10
0
votes
7
replies
2.2k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
updated 9.4 years ago by 16k • written 9.4 years ago by • 0
0
votes
0
replies
1.4k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
9.4 years ago Karolin Wiedemann • 0
0
votes
4
replies
2.3k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 9.4 years ago by 16k • written 9.4 years ago by • 0
0
votes
7
replies
2.8k
views
makeTxDbFromGFF yields an empty TxDb
annotation maketxdbfromgff genomicfeatures
9.5 years ago José Luis Lavín ▴ 10
0
votes
2
replies
2.6k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf TxDb maketxdbfromgff
updated 9.8 years ago by 16k • written 9.9 years ago by • 0
0
votes
2
replies
2.3k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures makeTxDbFromGFF
updated 10.0 years ago by 16k • written 10.0 years ago by • 0
22 results • Page 1 of 1
Recent ...
Replies
Comment: Intepretation of results by Tom • 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis by Tom • 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to etiennedanis • 0
Popular Question to javier.ruizramirez • 0
Autobiographer to Paul Harrison ▴ 100
Popular Question to mohammedtoufiq91 ▴ 10
Locations • All
Finland, 2 minutes ago
Denmark, 5 minutes ago
Germany, 26 minutes ago
Switzerland, 1 hour ago
Australia/Melbourne, 3 hours ago
Traffic: 646 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6