Showing : makecdfenv • reset
2
votes
4
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1.5k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.0 years ago by 65k • written 9.0 years ago by ▴ 10
2
votes
8
replies
4.1k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
7.7 years ago jayme.rickman • 0
1
vote
4
replies
2.9k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 10.3 years ago by 65k • written 10.3 years ago by ★ 13k
0
votes
3
replies
1.3k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.0 years ago by 65k • written 19.0 years ago by ▴ 40
0
votes
1
reply
998
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 18.5 years ago by ▴ 950 • written 18.5 years ago by ▴ 190
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
2
replies
1.3k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 15.1 years ago by ★ 1.2k • written 15.1 years ago by ▴ 20
0
votes
2
replies
1.2k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 12.3 years ago by 65k • written 12.3 years ago by ▴ 630
0
votes
0
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688
views
cdf environments for 100k mapping arrays
makecdfenv makecdfenv
19.5 years ago Christopher, Neil NIH/NCI ▴ 70
0
votes
0
replies
744
views
Re: makecdfenv
makecdfenv makecdfenv
21.2 years ago Rafael A. Irizarry ▴ 640
0
votes
1
reply
1.2k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 21.2 years ago by ▴ 640 • written 21.2 years ago by ▴ 20
0
votes
0
replies
1.1k
views
make CDF env (fwd)
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
21.1 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
691
views
Trouble installing 'makecdfenv'
makecdfenv makecdfenv
updated 20.3 years ago by ★ 5.5k • written 20.3 years ago by ▴ 20
0
votes
1
reply
714
views
makecdfenv not installed?
cdf makecdfenv cdf makecdfenv
updated 20.0 years ago by ★ 3.9k • written 20.0 years ago by ▴ 10
0
votes
0
replies
769
views
How to create customized probe package for GCRMA?
cdf probe affy makecdfenv gcrma cdf probe affy makecdfenv gcrma
20.0 years ago Kun Zhang ▴ 10
0
votes
1
reply
1.1k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 19.9 years ago by ★ 1.1k • written 19.9 years ago by ▴ 10
0
votes
1
reply
732
views
makecdfenv
makecdfenv makecdfenv
updated 19.8 years ago by 65k • written 19.8 years ago by ▴ 80
0
votes
1
reply
780
views
Selecting probe pairs for analysis
cdf probe makecdfenv cdf probe makecdfenv
updated 19.7 years ago by ▴ 950 • written 19.7 years ago by ▴ 60
0
votes
1
reply
762
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.6 years ago by 65k • written 19.6 years ago by ▴ 510
0
votes
0
replies
827
views
QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
19.6 years ago Crispin Miller ★ 1.1k
0
votes
0
replies
827
views
Custom CDF files
ChipName cdf probe makecdfenv gcrma ChipName cdf probe makecdfenv gcrma
19.3 years ago Ken Simpson ▴ 70
0
votes
2
replies
983
views
cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
19.2 years ago Margaret Gardiner-Garden ▴ 160
0
votes
2
replies
994
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 10
0
votes
2
replies
1.0k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 110
0
votes
1
reply
835
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 140
0
votes
0
replies
823
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
19.0 years ago James W. MacDonald 65k
0
votes
0
replies
836
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
19.0 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.0k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 18.9 years ago by 65k • written 18.9 years ago by ▴ 80
0
votes
1
reply
664
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 30
0
votes
0
replies
962
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
18.7 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
851
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 18.0 years ago by 65k • written 18.0 years ago by ▴ 30
0
votes
0
replies
717
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
18.0 years ago Justin Borevitz ▴ 170
0
votes
5
replies
1.5k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
17.7 years ago Wu, Xiwei ▴ 350
0
votes
2
replies
2.5k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 17.7 years ago by ▴ 120 • written 17.7 years ago by ▴ 340
0
votes
1
reply
1.1k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 20
0
votes
1
reply
1.2k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 17.5 years ago by 65k • written 17.5 years ago by ★ 2.2k
0
votes
4
replies
1.2k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 17.4 years ago by 25k • written 17.4 years ago by ★ 13k
0
votes
0
replies
871
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
17.4 years ago Charlyn Suarez ▴ 10
0
votes
1
reply
1.1k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 17.2 years ago by 21k • written 17.2 years ago by ▴ 60
0
votes
4
replies
1.7k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.0 years ago by ★ 1.2k • written 17.0 years ago by ▴ 30
0
votes
3
replies
1.7k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
16.9 years ago Salim Charaniya ▴ 20
0
votes
6
replies
1.2k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 16.9 years ago by 65k • written 16.9 years ago by ★ 1.3k
0
votes
9
replies
1.7k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 90
0
votes
2
replies
1.1k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 16.8 years ago by ▴ 50 • written 16.8 years ago by ▴ 290
0
votes
1
reply
873
views
error in makecdfenv
makecdfenv makecdfenv
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 130
0
votes
1
reply
986
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 16.6 years ago by ★ 1.2k • written 16.6 years ago by ★ 2.4k
0
votes
5
replies
1.1k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.0 years ago by 21k • written 16.0 years ago by ★ 2.0k
0
votes
1
reply
820
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 15.7 years ago by 65k • written 15.7 years ago by ▴ 40
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
50 results • Page 1 of 1
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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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