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maplot
•
reset
10
votes
8
replies
2.1k
views
MA plot
MAplot
15 months ago
Nathalie
▴ 20
5
votes
8
replies
1.2k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
rbronste
▴ 60
3
votes
6
replies
1.8k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
joseph.bergenstrahle
• 0
2
votes
2
replies
2.5k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 4.9 years ago by
Rory Stark
★ 5.2k • written 4.9 years ago by
melnuesch
▴ 10
2
votes
4
replies
1.6k
views
DiffBind MA plot
diffbind
maplot
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
grundelphine
• 0
2
votes
1
reply
2.0k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
rbronste
▴ 60
1
vote
1
reply
773
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.7 years ago by
Michael Love
41k • written 3.7 years ago by
evelas13
• 0
1
vote
2
replies
590
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
rbronste
▴ 60
1
vote
2
replies
1.2k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
rbronste
▴ 60
0
votes
0
replies
1.2k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.1 years ago
kritikamish99
▴ 10
0
votes
3
replies
2.7k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.6 years ago by
Michael Love
41k • written 6.6 years ago by
jshouse
▴ 10
0
votes
1
reply
1.5k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
phurbusang
• 0
0
votes
4
replies
1.1k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
ma619
• 0
0
votes
2
replies
1.4k
views
MA plot scattering pattern
deseq2
MAplot
5.4 years ago
avitalwasser
• 0
0
votes
3
replies
2.2k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.2 years ago by
Michael Love
41k • written 3.2 years ago by
sp
• 0
0
votes
2
replies
971
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 14 months ago by
ATpoint
★ 4.1k • written 14 months ago by
Michael
• 0
16 results • Page
1 of 1
Recent ...
Replies
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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