Bioconductor Medip-seq

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R medip-seq MEDIPS

2.9 years ago Luomeng • 0

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

4.6 years ago rtrivedi1 ▴ 10

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MEDIPS MeDIP-seq

updated 4.2 years ago by Lukas ▴ 20 • written 6.1 years ago by lshepard ▴ 40

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1.1k

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medip-seq createset

updated 7.0 years ago by Bioconductor Community 0 • written 7.1 years ago by oussama.badad • 0

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1.4k

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medips medip-seq dna methylation dmr analysis

updated 7.1 years ago by Lukas Chavez ▴ 570 • written 7.1 years ago by mtefit • 0

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1.1k

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medip-seq methylation CpGs

7.1 years ago saripalligautam86 ▴ 10

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medips bsgenome medip-seq

updated 7.8 years ago by Lukas Chavez ▴ 570 • written 7.8 years ago by vjain • 0

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9.4k

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diffbind medip-seq edger deseq2

updated 15 months ago by khanwaled68 • 0 • written 9.8 years ago by florian.noack ▴ 60

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2.6k

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R medips medip-seq

9.4 years ago • updated 8.5 years ago stb • 0

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2.3k

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medips medip-seq error lukas

updated 8.6 years ago by Matthias Lienhard ▴ 280 • written 8.6 years ago by anupriyaverma1408 • 0

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1.6k

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medips medip-seq peak finding luckas

updated 8.6 years ago by Lukas Chavez ▴ 570 • written 8.6 years ago by anupriyaverma1408 • 0

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1.6k

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medips R medip-seq pair-end reads

updated 9.1 years ago by Lukas Chavez ▴ 570 • written 9.1 years ago by stb • 0

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1.5k

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medips medip-seq R pair-end reads

updated 9.3 years ago by Lukas Chavez ▴ 570 • written 9.3 years ago by stb • 0

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2.0k

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R medip-seq medips bwa

updated 9.4 years ago by Lukas Chavez ▴ 570 • written 9.4 years ago by stb • 0

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1.7k

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annotation chippeakanno rattus norvegicus medip-seq

9.8 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k

> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…

Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0

Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…

Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0

In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…

Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0

Sounds good. @[time][1] [1]: https://timeduration.github.io

Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0

For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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