Bioconductor Medip-seq

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530

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R medip-seq MEDIPS

14 months ago Luomeng • 0

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1.6k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

2.9 years ago rtrivedi1 ▴ 10

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1.3k

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MEDIPS MeDIP-seq

updated 2.6 years ago by Lukas ▴ 20 • written 4.4 years ago by lshepard ▴ 40

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762

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medip-seq createset

updated 5.3 years ago by Bioconductor Community 0 • written 5.4 years ago by oussama.badad • 0

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963

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medips medip-seq dna methylation dmr analysis

updated 5.4 years ago by Lukas Chavez ▴ 570 • written 5.4 years ago by mtefit • 0

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812

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medip-seq methylation CpGs

5.5 years ago saripalligautam86 ▴ 10

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1.9k

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medips bsgenome medip-seq

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by vjain • 0

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6.5k

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diffbind medip-seq edger deseq2

updated 6.5 years ago by Rory Stark ★ 5.2k • written 8.1 years ago by florian.noack ▴ 60

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1.9k

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R medips medip-seq

7.7 years ago • updated 6.9 years ago stb • 0

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1.6k

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medips medip-seq error lukas

updated 7.0 years ago by Matthias Lienhard ▴ 240 • written 7.0 years ago by anupriyaverma1408 • 0

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1.2k

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medips medip-seq peak finding luckas

updated 7.0 years ago by Lukas Chavez ▴ 570 • written 7.0 years ago by anupriyaverma1408 • 0

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1.1k

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medips R medip-seq pair-end reads

updated 7.4 years ago by Lukas Chavez ▴ 570 • written 7.4 years ago by stb • 0

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1.1k

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medips medip-seq R pair-end reads

updated 7.6 years ago by Lukas Chavez ▴ 570 • written 7.6 years ago by stb • 0

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1.5k

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R medip-seq medips bwa

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by stb • 0

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1.3k

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annotation chippeakanno rattus norvegicus medip-seq

8.2 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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