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memory problem
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split champ.load for large number of samples
memory problem
champ.load
5.5 years ago
petra.lenzini
• 0
0
votes
4
replies
949
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DESeq2 memory allocation question
deseq2
memory problem
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
rbronste
▴ 60
1
vote
2
replies
915
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
perdedorium
• 0
0
votes
1
reply
833
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ProcessAmplicons using very little memory on big job?
edgeR
processamplicons
memory problem
5.8 years ago
sdalin
• 0
0
votes
3
replies
1.6k
views
GAIA package Error: cannot allocate vector of size 852.1 Mb
memory problem
gaia
updated 6.4 years ago by
Sandro Morganella
▴ 40 • written 6.4 years ago by
drusmanbashir
• 0
2
votes
3
replies
1.6k
views
Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo
hta2.0
affymetrix microarrays
memory problem
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
svlachavas
▴ 830
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Comment: putting my own expression data in deseq2
by
ATpoint
★ 4.1k
> directly from GEOquery I can tell you that GEOquery retrieves array data not appropriate for DESeq2. For anything else make your questi…
Comment: Assist me in determining whether the analysis process using the limma package ha
by
SSSJec
• 0
Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…
Comment: Why p value inconsistent when using different number of pathway score?
by
Gordon Smyth
50k
Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
Chris
• 0
Thank you! The resource I use may mispresent the requirement input of fgsea.
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
alserg
▴ 260
fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
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Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
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