Bioconductor Methylation

Showing : methylation • reset

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301

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EPICV1 Methylation combineArrays minifi EPICv2manifest

4 weeks ago • updated 3 days ago Kim • 0

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162

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bsseq methylation

updated 4 weeks ago by James W. MacDonald 65k • written 5 weeks ago by ja569116 • 0

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549

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edgeR methylation

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by sat • 0

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260

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Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm

4 months ago kyj2226 • 0

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1.4k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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1.8k

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ChAMP champ methylation

updated 8 months ago by mike • 0 • written 4.1 years ago by jkong • 0

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2.0k

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ChAMP methylation BMIQ

updated 6 months ago by peter.brederlo • 0 • written 5.0 years ago by moldach ▴ 20

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1.4k

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minfi software error methylation illumina450k

updated 11 months ago by kuzn.di • 0 • written 8.4 years ago by pm2015 • 0

8 results • Page 1 of 1

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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Popular Question to WouterDeCoster ▴ 130

Scholar to Michael Love 42k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k