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Irene
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ATpoint
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Comment: fgsea significant result
by
Chris
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Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
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Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please.
```
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
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Poonam
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I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance.
S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
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Michael Love
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The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb.
It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
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Michael Love
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It's typical that results are presented with each group having its own FDR control.
So presenting each comparison with the adjusted p-va…
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