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mirna-seq
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how to control age and gender effect in expression data using DESeq2
deseq2
rnaseq
mirna-seq
differential gene expression
written 6.2 years ago by
klalit1803
• 0
2
votes
3
replies
1.0k
views
Limma: Differential expression for micro RNA sequence data
mirna-seq
limma
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Michael Stone
• 0
0
votes
2
replies
921
views
help for package DESeq2 in R
mirna-seq
updated 5.9 years ago by
Levi Waldron
★ 1.1k • written 5.9 years ago by
ndiayediop2
• 0
1
vote
2
replies
791
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help for deseq2
mirna-seq
6.0 years ago • updated 5.9 years ago
ndiayediop2
• 0
6
votes
7
replies
2.5k
views
Differences between RTCGA and TCGAbiolinks data
r
survival analysis
rtcga
tcgabiolinks
mirna-seq
5.9 years ago
atakanekiz
▴ 30
0
votes
1
reply
701
views
How to find non-DE miRNAs using Deseq2 ?
deseq2
differentially expression
mirna-seq
mirna target prediction
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Björn
• 0
0
votes
3
replies
1.0k
views
DESeq2: would 'contrast' work for serial experiments?
DESeq2
mirna-seq
small RNA-seq
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
CandiceChuDVM
▴ 40
1
vote
2
replies
4.4k
views
Multiple comparisons for DE analysis with DESeq2
deseq2
mirna-seq
experimental design
differential expression
updated 7.0 years ago by
Gavin Kelly
▴ 680 • written 7.0 years ago by
francesco.gandolfi
▴ 10
0
votes
4
replies
4.5k
views
miRNA-seq data analysis
miRNA
mirna-seq
updated 7.1 years ago by
Jon Bråte
▴ 250 • written 7.2 years ago by
just
• 0
9 results • Page
1 of 1
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Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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