Bioconductor Model matrix

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limma model matrix linear regression

5.4 years ago • updated 5.3 years ago agm • 0

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deseq2 model matrix experimental design multiple factor design

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by amye107 • 0

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deseq2 linear combination model matrix

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by sally_b86 • 0

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rnaseq edger statistics model matrix

updated 7.1 years ago by Steve Lianoglou ★ 13k • written 7.1 years ago by David R ▴ 90

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deseq2 design and contrast matrix model matrix

7.7 years ago mrigaya.mehra ▴ 10

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deseq2 differential gene expression model matrix

updated 7.7 years ago by Michael Love 42k • written 7.7 years ago by gregory.l.stone ▴ 10

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edger deseq2 model matrix differential expression

8.2 years ago ta65 • 0

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ballgown linear model model matrix custom model

8.6 years ago • updated 8.5 years ago sbcn ▴ 80

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limma model matrix limma design matrix complex-design

updated 9.4 years ago by Aaron Lun ★ 28k • written 9.4 years ago by Guido Hooiveld ★ 4.1k

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limma limma design matrix model matrix

updated 9.5 years ago by Aaron Lun ★ 28k • written 9.5 years ago by andrew.j.skelton73 ▴ 370

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edger design matrix model matrix

updated 9.6 years ago by Aaron Lun ★ 28k • written 9.6 years ago by silvia.paolucci81 • 0

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Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by josephjohnsonlo • 0

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Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

Answer: featureCounts segmentation fault with large chromosomes by vkkodali ▴ 10

Thanks to @yangliao this issue is fixed in subread v2.0.8

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Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

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