Showing : model matrix • reset
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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma model matrix linear regression
6.4 years ago • updated 6.3 years ago agm • 0
1
vote
2
replies
1.9k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
0
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7
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1.9k
views
Model matrix not full rank
deseq2 linear combination model matrix
updated 8.1 years ago by 43k • written 8.1 years ago by • 0
2
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4
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1.7k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 8.1 years ago by ★ 13k • written 8.1 years ago by ▴ 90
3
votes
6
replies
31k
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Designing a contrast in DESEQ
deseq2 design and contrast matrix model matrix
8.7 years ago mrigaya.mehra ▴ 10
0
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8
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2.3k
views
DESeq2 glibc error
deseq2 differential gene expression model matrix
updated 8.8 years ago by 43k • written 8.8 years ago by ▴ 10
4
votes
6
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3.1k
views
Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 model matrix differential expression
9.2 years ago ta65 • 0
2
votes
7
replies
3.7k
views
ballgown custom models
ballgown linear model model matrix custom model
9.7 years ago • updated 9.6 years ago sbcn ▴ 80
7
votes
6
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4.7k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 10.4 years ago by ★ 29k • written 10.4 years ago by ★ 4.1k
9
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2
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6.0k
views
Limma Model Matrix Understanding
limma limma design matrix model matrix
updated 10.5 years ago by ★ 29k • written 10.5 years ago by ▴ 370
2
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5
replies
4.7k
views
design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 10.6 years ago by ★ 29k • written 10.6 years ago by • 0
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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