Showing : model matrix • reset
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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma model matrix linear regression
5.6 years ago agm • 0
1
vote
2
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1.6k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 7.0 years ago by 43k • written 7.0 years ago by • 0
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7
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1.7k
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Model matrix not full rank
deseq2 linear combination model matrix
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
2
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4
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1.4k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.3 years ago by ★ 13k • written 7.3 years ago by ▴ 90
3
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6
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30k
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Designing a contrast in DESEQ
deseq2 design and contrast matrix model matrix
8.0 years ago • updated 7.9 years ago mrigaya.mehra ▴ 10
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8
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2.0k
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DESeq2 glibc error
deseq2 differential gene expression model matrix
updated 8.0 years ago by 43k • written 8.0 years ago by ▴ 10
4
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6
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2.8k
views
Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 model matrix differential expression
8.4 years ago ta65 • 0
2
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7
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3.4k
views
ballgown custom models
ballgown linear model model matrix custom model
8.9 years ago • updated 8.8 years ago sbcn ▴ 80
7
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6
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4.3k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 9.6 years ago by ★ 28k • written 9.6 years ago by ★ 4.1k
9
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2
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5.7k
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Limma Model Matrix Understanding
limma limma design matrix model matrix
updated 9.8 years ago by ★ 28k • written 9.8 years ago by ▴ 370
2
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5
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4.3k
views
design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 9.8 years ago by ★ 28k • written 9.8 years ago by • 0
11 results • Page 1 of 1
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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k
This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…
Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k
I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105
Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k
You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…
Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
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Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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