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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma model matrix linear regression
6.5 years ago • updated 6.4 years ago agm • 0
1
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2
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2.0k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 7.9 years ago by 43k • written 7.9 years ago by • 0
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7
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1.9k
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Model matrix not full rank
deseq2 linear combination model matrix
updated 8.2 years ago by 43k • written 8.2 years ago by • 0
2
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4
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1.7k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 8.2 years ago by ★ 13k • written 8.2 years ago by ▴ 90
3
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6
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31k
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Designing a contrast in DESEQ
deseq2 design and contrast matrix model matrix
8.8 years ago mrigaya.mehra ▴ 10
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2.3k
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DESeq2 glibc error
deseq2 differential gene expression model matrix
updated 8.9 years ago by 43k • written 8.9 years ago by ▴ 10
4
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6
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3.1k
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Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 model matrix differential expression
9.3 years ago ta65 • 0
2
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7
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3.8k
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ballgown custom models
ballgown linear model model matrix custom model
9.8 years ago • updated 9.7 years ago sbcn ▴ 80
7
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6
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4.8k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 10.5 years ago by ★ 29k • written 10.5 years ago by ★ 4.1k
9
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Limma Model Matrix Understanding
limma limma design matrix model matrix
updated 10.6 years ago by ★ 29k • written 10.6 years ago by ▴ 370
2
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5
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4.7k
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design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 10.7 years ago by ★ 29k • written 10.7 years ago by • 0
11 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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