Bioconductor Model matrix

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limma model matrix linear regression

6.5 years ago agm • 0

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deseq2 model matrix experimental design multiple factor design

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by amye107 • 0

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deseq2 linear combination model matrix

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by sally_b86 • 0

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rnaseq edger statistics model matrix

updated 8.2 years ago by Steve Lianoglou ★ 13k • written 8.2 years ago by David R ▴ 90

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deseq2 design and contrast matrix model matrix

8.8 years ago mrigaya.mehra ▴ 10

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deseq2 differential gene expression model matrix

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by gregory.l.stone ▴ 10

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edger deseq2 model matrix differential expression

9.3 years ago ta65 • 0

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ballgown linear model model matrix custom model

9.8 years ago • updated 9.7 years ago sbcn ▴ 80

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limma model matrix limma design matrix complex-design

updated 10.5 years ago by Aaron Lun ★ 29k • written 10.5 years ago by Guido Hooiveld ★ 4.1k

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limma limma design matrix model matrix

updated 10.6 years ago by Aaron Lun ★ 29k • written 10.6 years ago by andrew.j.skelton73 ▴ 370

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4.7k

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edger design matrix model matrix

updated 10.7 years ago by Aaron Lun ★ 29k • written 10.7 years ago by silvia.paolucci81 • 0

11 results • Page 1 of 1

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Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0

For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…

Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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