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model matrix
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2
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1.5k
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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma
model matrix
linear regression
6.2 years ago
agm
• 0
1
vote
2
replies
1.9k
views
DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2
model matrix
experimental design
multiple factor design
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
amye107
• 0
0
votes
7
replies
1.9k
views
Model matrix not full rank
deseq2
linear combination
model matrix
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
sally_b86
• 0
2
votes
4
replies
1.6k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq
edger
statistics
model matrix
updated 7.9 years ago by
Steve Lianoglou
★ 13k • written 7.9 years ago by
David R
▴ 90
3
votes
6
replies
30k
views
Designing a contrast in DESEQ
deseq2
design and contrast matrix
model matrix
8.5 years ago
mrigaya.mehra
▴ 10
0
votes
8
replies
2.2k
views
DESeq2 glibc error
deseq2
differential gene expression
model matrix
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
gregory.l.stone
▴ 10
4
votes
6
replies
3.0k
views
Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger
deseq2
model matrix
differential expression
9.0 years ago
ta65
• 0
2
votes
7
replies
3.7k
views
ballgown custom models
ballgown
linear model
model matrix
custom model
9.5 years ago • updated 9.4 years ago
sbcn
▴ 80
7
votes
6
replies
4.6k
views
Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma
model matrix
limma design matrix
complex-design
updated 10.2 years ago by
Aaron Lun
★ 29k • written 10.2 years ago by
Guido Hooiveld
★ 4.1k
9
votes
2
replies
5.9k
views
Limma Model Matrix Understanding
limma
limma design matrix
model matrix
updated 10.3 years ago by
Aaron Lun
★ 29k • written 10.3 years ago by
andrew.j.skelton73
▴ 370
2
votes
5
replies
4.6k
views
design model matrix for nested factors (edgeR)
edger
design matrix
model matrix
updated 10.4 years ago by
Aaron Lun
★ 29k • written 10.4 years ago by
silvia.paolucci81
• 0
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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0
by
littlefishes20
▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
by
James W. MacDonald
68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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