Showing : model matrix • reset
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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma model matrix linear regression
5.5 years ago agm • 0
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2
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1.6k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
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7
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Model matrix not full rank
deseq2 linear combination model matrix
updated 7.2 years ago by 43k • written 7.2 years ago by • 0
2
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4
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1.4k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.2 years ago by ★ 13k • written 7.2 years ago by ▴ 90
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6
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29k
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Designing a contrast in DESEQ
deseq2 design and contrast matrix model matrix
7.9 years ago mrigaya.mehra ▴ 10
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2.0k
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DESeq2 glibc error
deseq2 differential gene expression model matrix
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 10
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6
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2.8k
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Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 model matrix differential expression
8.3 years ago ta65 • 0
2
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7
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3.4k
views
ballgown custom models
ballgown linear model model matrix custom model
8.8 years ago • updated 8.7 years ago sbcn ▴ 80
7
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6
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4.3k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 9.5 years ago by ★ 28k • written 9.5 years ago by ★ 4.1k
9
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Limma Model Matrix Understanding
limma limma design matrix model matrix
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 370
2
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5
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4.2k
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design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 9.7 years ago by ★ 28k • written 9.7 years ago by • 0
11 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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