Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
monocle
•
reset
5
votes
3
replies
1.4k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
5.3 years ago
S.Webb6
▴ 40
3
votes
1
reply
1.1k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
ankur.chakravarthy.10
▴ 40
1
vote
5
replies
2.5k
views
Monocle causes R session to crash
software error
monocle
updated 6.8 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
galib36
▴ 10
1
vote
1
reply
162
views
Differentially expressed genes in monocle pseudotime
monocle
updated 9 days ago by
Gordon Smyth
50k • written 12 days ago by
kthapa
• 0
1
vote
2
replies
1.7k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 8.8 years ago by
ksekine
• 0 • written 9.0 years ago by
Jon Bråte
▴ 250
1
vote
4
replies
2.1k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 3.7 years ago by
Aaron Lun
★ 28k • written 3.7 years ago by
lirongrossmann
▴ 40
1
vote
1
reply
2.0k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 6.0 years ago by
davide risso
▴ 950 • written 6.0 years ago by
chitsazanalex
▴ 10
0
votes
0
replies
2.5k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
6.8 years ago
A.H
• 0
0
votes
0
replies
1.4k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.8 years ago
kevin.rue
▴ 350
0
votes
1
reply
1.7k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.2 years ago
Mehmet Ilyas Cosacak
• 0
0
votes
1
reply
1.5k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
supremerulersuraj
• 0
0
votes
1
reply
4.6k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.7 years ago
444579004
• 0
0
votes
1
reply
2.3k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
4.3 years ago
pbachali
▴ 50
0
votes
1
reply
2.9k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
initialqy
• 0
0
votes
0
replies
449
views
weighting sample group
monocle
SingleCell
DifferentialExpression
19 months ago
Sogand
• 0
0
votes
2
replies
329
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
7 months ago
EspressoKris
▴ 10
0
votes
0
replies
1.4k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.4 years ago
wanghao1993333
• 0
0
votes
0
replies
1.8k
views
Monocle-strange differential expression results
monocle
differential expression
8.3 years ago
sunil.mangalam
• 0
0
votes
1
reply
3.5k
views
error in monocle.
monocle
updated 7.1 years ago by
driver.ian
• 0 • written 7.1 years ago by
ikwak
• 0
0
votes
1
reply
1.1k
views
Monocle group sizes
monocle
7.1 years ago
ribioinfo
▴ 100
0
votes
0
replies
1.0k
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
6.9 years ago
alexandriapinto1
▴ 10
0
votes
3
replies
1.3k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 6.8 years ago by
Michael Love
41k • written 6.9 years ago by
bvernot
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards
• All
Scholar
to
James W. MacDonald
65k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Supporter
to
Jonathan
▴ 10
Locations
• All
India,
9 minutes ago
South Korea,
15 minutes ago
France,
26 minutes ago
INDIA,
54 minutes ago
United States,
1 hour ago
Traffic: 688 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6