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Comment: putting my own expression data in deseq2
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ATpoint
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4.1k
> directly from GEOquery
I can tell you that GEOquery retrieves array data not appropriate for DESeq2. For anything else make your questi…
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Thanks for your reply.
I understand the principle of adjusted P-values, but I still want to address that issue.
The description of the G…
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Gordon Smyth
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Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
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Chris
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Thank you! The resource I use may mispresent the requirement input of fgsea.
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fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
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