Showing : msigdb • reset
2
votes
2
replies
1.2k
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
14 months ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
539
views
Filtering the genesets for fgseaMultiLevel
msigdb fgsea msig
16 months ago Tanvi • 0
0
votes
2
replies
1.1k
views
How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
19 months ago Seongsu • 0
4
votes
3
replies
1.2k
views
Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb gmt GSEA
written 20 months ago by • 0
4
votes
4
replies
4.7k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea GSVA biotype proteincoding msigdb
updated 13 months ago by • 0 • written 23 months ago by ▴ 200
1
vote
1
reply
2.5k
views
Cleaning GeneSets from GSEA
msigdb GSEABase GSVA
updated 3.6 years ago by ★ 3.4k • written 3.6 years ago by • 0
1
vote
1
reply
2.6k
views
Tutorial: Update gene symbols in GeneSetCollection
gseabase msigdb genesetcollection Tutorial
written 7.4 years ago by ▴ 170
2
votes
2
replies
5.4k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler GSEA MSIGDB
updated 7.6 years ago by ★ 1.2k • written 7.7 years ago by • 0
1
vote
2
replies
1.8k
views
Update to MSigDB derivates for romer()?
limma romer msigdb
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 40
0
votes
0
replies
1.6k
views
hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
10.3 years ago petyuk ▴ 70
10 results • Page 1 of 1
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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