Showing : msigdb • reset
2
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fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
12 months ago Assa Yeroslaviz ★ 1.5k
0
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511
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Filtering the genesets for fgseaMultiLevel
msigdb fgsea msig
15 months ago Tanvi • 0
0
votes
2
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972
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How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
18 months ago Seongsu • 0
4
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3
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1.2k
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Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb gmt GSEA
written 18 months ago by • 0
4
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4
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4.5k
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How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea GSVA biotype proteincoding msigdb
updated 12 months ago by • 0 • written 22 months ago by ▴ 200
1
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1
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2.5k
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Cleaning GeneSets from GSEA
msigdb GSEABase GSVA
updated 3.5 years ago by ★ 3.4k • written 3.5 years ago by • 0
1
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1
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2.5k
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Tutorial: Update gene symbols in GeneSetCollection
gseabase msigdb genesetcollection Tutorial
written 7.3 years ago by ▴ 170
2
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2
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5.3k
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Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler GSEA MSIGDB
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by • 0
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2
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1.7k
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Update to MSigDB derivates for romer()?
limma romer msigdb
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 40
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0
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1.6k
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hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
10.2 years ago petyuk ▴ 70
10 results • Page 1 of 1
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Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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