Bioconductor Msigdb

Showing : msigdb • reset

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1.2k

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GSEABase fgsea msigdb GeneSetEnrichment

16 months ago Assa Yeroslaviz ★ 1.5k

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582

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msigdb fgsea msig

18 months ago Tanvi • 0

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1.1k

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geneset GeneSetEnrichment msigdb

21 months ago Seongsu • 0

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1.3k

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msigdb gmt GSEA

written 21 months ago by Georg • 0

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5.3k

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ssgsea GSVA biotype proteincoding msigdb

updated 15 months ago by tifaGis • 0 • written 2.1 years ago by snijesh ▴ 200

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2.6k

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msigdb GSEABase GSVA

updated 3.8 years ago by Robert Castelo ★ 3.4k • written 3.8 years ago by forlani.luca • 0

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2.7k

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gseabase msigdb genesetcollection Tutorial

written 7.5 years ago by t.kuilman ▴ 170

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5.6k

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clusterprofiler GSEA MSIGDB

updated 7.8 years ago by Guangchuang Yu ★ 1.2k • written 7.8 years ago by thomasjenner333 • 0

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1.8k

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limma romer msigdb

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by Jon Manning ▴ 40

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1.7k

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category gostats msigdb hypergeometric test

10.4 years ago petyuk ▴ 70

10 results • Page 1 of 1

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Comment: Limma-voom sample weights and impact on DEG numbers by A.Barden ▴ 20

Apologies for the late response - thank you for this information, it is very helpful.

Comment: Converting Probe IDs to HGNC symbols by Manav ▴ 10

ah thank u so much

Comment: Guitar R package requires update due to dependency GenomicFeatures by Sean Davis 21k

A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…

Answer: Converting Probe IDs to HGNC symbols by Sean Davis 21k

The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…

Comment: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k

If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…

Votes

Answer: Limma-voom sample weights and impact on DEG numbers

Answer: Converting Probe IDs to HGNC symbols

Converting Probe IDs to HGNC symbols

Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?

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