Showing : msigdb • reset
2
votes
2
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876
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fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
6 months ago Assa Yeroslaviz ★ 1.5k
0
votes
0
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405
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Filtering the genesets for fgseaMultiLevel
msigdb fgsea msig
9 months ago Tanvi • 0
0
votes
2
replies
748
views
How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
11 months ago Seongsu • 0
4
votes
3
replies
891
views
Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb gmt GSEA
written 12 months ago by • 0
4
votes
4
replies
3.4k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea GSVA biotype proteincoding msigdb
updated 5 months ago by • 0 • written 16 months ago by ▴ 200
1
vote
1
reply
2.1k
views
Cleaning GeneSets from GSEA
msigdb GSEABase GSVA
updated 3.0 years ago by ★ 3.4k • written 3.0 years ago by • 0
1
vote
1
reply
2.3k
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Tutorial: Update gene symbols in GeneSetCollection
gseabase msigdb genesetcollection Tutorial
written 6.8 years ago by ▴ 170
2
votes
2
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5.0k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler GSEA MSIGDB
updated 7.0 years ago by ★ 1.2k • written 7.0 years ago by • 0
1
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2
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1.6k
views
Update to MSigDB derivates for romer()?
limma romer msigdb
updated 9.6 years ago by 68k • written 9.6 years ago by ▴ 40
0
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0
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1.5k
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hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
9.6 years ago petyuk ▴ 70
10 results • Page 1 of 1
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Comment: How to reverse complement some elements of a DNAStringSet by shrill.asp.tufl • 0
Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …
Comment: Ensembl site unresponsive via biomaRt by mdeea123 ▴ 10
I am also having issues using BioMart to run code that has worked before. The problem first occurred last week. As I have encountered these…
Comment: Bioconductor unable to update 'curl' by kagodwi2 • 0
UPDATE: I was able to get curl to work! It seems that because the new version was literally JUST released, there is something "funky" goin…
Comment: Bioconductor unable to update 'curl' by kagodwi2 • 0
Thank you! This seems to narrow down the issue, at least. I successfully installed "curl" into both paths, but received the same issue of…
Comment: Bioconductor unable to update 'curl' by shepherl 4.1k
Not sure how to completely clear the issues but it might be useful to see which location curl is in `find.package("curl")` and if necessary…
Votes
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
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