Bioconductor Msigdb

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1.2k

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GSEABase fgsea msigdb GeneSetEnrichment

16 months ago Assa Yeroslaviz ★ 1.5k

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587

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msigdb fgsea msig

18 months ago Tanvi • 0

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1.1k

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geneset GeneSetEnrichment msigdb

21 months ago Seongsu • 0

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1.3k

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msigdb gmt GSEA

written 21 months ago by Georg • 0

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5.3k

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ssgsea GSVA biotype proteincoding msigdb

updated 15 months ago by tifaGis • 0 • written 2.1 years ago by snijesh ▴ 200

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2.6k

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msigdb GSEABase GSVA

updated 3.8 years ago by Robert Castelo ★ 3.4k • written 3.8 years ago by forlani.luca • 0

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2.7k

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gseabase msigdb genesetcollection Tutorial

written 7.5 years ago by t.kuilman ▴ 170

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5.6k

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clusterprofiler GSEA MSIGDB

updated 7.8 years ago by Guangchuang Yu ★ 1.2k • written 7.8 years ago by thomasjenner333 • 0

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1.8k

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limma romer msigdb

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by Jon Manning ▴ 40

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1.7k

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category gostats msigdb hypergeometric test

10.4 years ago petyuk ▴ 70

10 results • Page 1 of 1

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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…

Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80

When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…

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Comment: Guitar R package requires update due to dependency GenomicFeatures

A: how to control age and gender effect in expression data using DESeq2

how to control age and gender effect in expression data using DESeq2

Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond

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