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msigdb
•
reset
2
votes
2
replies
1.2k
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
13 months ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
518
views
Filtering the genesets for fgseaMultiLevel
msigdb
fgsea
msig
16 months ago
Tanvi
• 0
0
votes
2
replies
994
views
How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
18 months ago
Seongsu
• 0
4
votes
3
replies
1.2k
views
Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb
gmt
GSEA
written 19 months ago by
Georg
• 0
4
votes
4
replies
4.6k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 12 months ago by
tifaGis
• 0 • written 22 months ago by
snijesh
▴ 200
1
vote
1
reply
2.5k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
updated 3.6 years ago by
Robert Castelo
★ 3.4k • written 3.6 years ago by
forlani.luca
• 0
1
vote
1
reply
2.5k
views
Tutorial:
Update gene symbols in GeneSetCollection
gseabase
msigdb
genesetcollection
Tutorial
written 7.3 years ago by
t.kuilman
▴ 170
2
votes
2
replies
5.4k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler
GSEA
MSIGDB
updated 7.6 years ago by
Guangchuang Yu
★ 1.2k • written 7.6 years ago by
thomasjenner333
• 0
1
vote
2
replies
1.7k
views
Update to MSigDB derivates for romer()?
limma
romer
msigdb
updated 10.1 years ago by
James W. MacDonald
68k • written 10.2 years ago by
Jon Manning
▴ 40
0
votes
0
replies
1.6k
views
hyperGTest for MSigDB categories
category
gostats
msigdb
hypergeometric test
10.2 years ago
petyuk
▴ 70
10 results • Page
1 of 1
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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