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Assa Yeroslaviz
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19 months ago
Seongsu
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updated 3.6 years ago by
Robert Castelo
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written 3.6 years ago by
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Tutorial:
Update gene symbols in GeneSetCollection
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t.kuilman
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updated 7.7 years ago by
Guangchuang Yu
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written 7.7 years ago by
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updated 10.2 years ago by
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written 10.2 years ago by
Jon Manning
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10.3 years ago
petyuk
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Comment: Getting a large intercept with DESeq2
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Michael Love
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Thanks James -- Denise you can check the "note on factor levels" in the vignette.
And I'd recommend `plotCounts()` for looking at individu…
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As a trivial example, consider this:
```
> model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4))))
(Intercept) Tre…
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The default parameterization in R is a treatment-contrasts parameterization that sets one of your groups as the baseline. So the intercept …
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There is no "MUST", but pseudobulk aggregation is beneficial to a) enable use of tested and robust methods such as limma (though it could u…
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