Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
msigdb
•
reset
1
vote
2
replies
2.8k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
written 3.9 years ago by
forlani.luca
• 0
2
votes
2
replies
1.3k
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
17 months ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
646
views
Filtering the genesets for fgseaMultiLevel
msigdb
fgsea
msig
19 months ago
Tanvi
• 0
0
votes
2
replies
1.2k
views
How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
22 months ago
Seongsu
• 0
4
votes
3
replies
1.5k
views
Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb
gmt
GSEA
written 22 months ago by
Georg
• 0
4
votes
4
replies
6.2k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 16 months ago by
tifaGis
• 0 • written 2.2 years ago by
snijesh
▴ 200
1
vote
1
reply
2.7k
views
Tutorial:
Update gene symbols in GeneSetCollection
gseabase
msigdb
genesetcollection
Tutorial
written 7.6 years ago by
t.kuilman
▴ 170
2
votes
2
replies
5.7k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler
GSEA
MSIGDB
updated 7.9 years ago by
Guangchuang Yu
★ 1.2k • written 7.9 years ago by
thomasjenner333
• 0
1
vote
2
replies
1.8k
views
Update to MSigDB derivates for romer()?
limma
romer
msigdb
updated 10.4 years ago by
James W. MacDonald
68k • written 10.5 years ago by
Jon Manning
▴ 40
0
votes
0
replies
1.7k
views
hyperGTest for MSigDB categories
category
gostats
msigdb
hypergeometric test
10.5 years ago
petyuk
▴ 70
10 results • Page
1 of 1
Recent ...
Replies
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Awards
• All
Popular Question
to
shepherl
4.3k
Popular Question
to
Steve Lianoglou
★ 13k
Teacher
to
Michael Love
43k
Supporter
to
fl
▴ 20
Popular Question
to
James W. MacDonald
68k
Locations
• All
United Kingdom,
19 minutes ago
United States,
32 minutes ago
United States,
2 hours ago
The city by the bay,
3 hours ago
Vietnam,
4 hours ago
Traffic: 1212 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6