Bioconductor Multiple comparisons

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limma illumina differential gene expression multiple comparisons design matrix

8.9 years ago • updated 8.8 years ago svlachavas ▴ 830

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4.9k

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limma design matrix makecontrasts multiple comparisons

7.2 years ago annabelle.congras ▴ 10

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3.9k

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edger design and contrast matrix multiple factor design multiple comparisons

updated 8.8 years ago by James W. MacDonald 65k • written 8.8 years ago by mouchkam ▴ 20

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1.3k

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rnaseq pairwise multiple comparisons deseq2

updated 8.2 years ago by Michael Love 41k • written 8.2 years ago by hamaor • 0

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2.1k

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deseq2 rnaseq contrast multiple comparisons fdrtool

7.9 years ago sebastiano.curreli • 0

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rnaseq multiple comparisons post hoc deseq2

7.9 years ago • updated 7.2 years ago laianavarromartin ▴ 20

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1.9k

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limma multiple factor design multiple comparisons

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by xluong • 0

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924

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deseq2 deseq rna-seq multiple comparisons

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by rbronste ▴ 60

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deseq2 multiple comparisons

8.9 years ago annalisa.giampetruzzi • 0

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qvalue pvalue r multiple comparisons

updated 7.3 years ago by Storey, John D. ▴ 100 • written 7.3 years ago by tombernardryan ▴ 50

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deseq2 padj multiple comparisons differential gene expression

updated 7.1 years ago by Michael Love 41k • written 7.1 years ago by tarun2 • 0

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1.5k

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deseq2 multiple comparisons contrast

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by serpalma.v ▴ 60

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865

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edger multifactorial design multiple comparisons differential gene expression

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by svlachavas ▴ 830

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5.7k

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edger multiple comparisons anova glm

updated 8.9 years ago by Ryan C. Thompson ★ 7.9k • written 8.9 years ago by chickenchamp4 ▴ 20

14 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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