Bioconductor Ncrna

Showing : ncrna • reset

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computational biology molecular biology RNA r-loop ncRNA Job

7.0 years ago l.brown ▴ 10

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2.1k

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grch37 transcripts biotype biomaRt ncrna

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by sergio.martinezcuesta ▴ 10

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1.8k

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gsea ncrna coexpression gene set analysis gene set testing

9.5 years ago m.fletcher ▴ 20

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1.5k

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biomart ncrna

updated 10.1 years ago by Thomas Maurel ▴ 800 • written 10.1 years ago by Zhang,Jiexin ▴ 20

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5.7k

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trna ncrna genomicfeatures featuredb biomart

updated 10.6 years ago by Hervé Pagès 16k • written 10.6 years ago by Keith Hughitt ▴ 180

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Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k

apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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