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ncrna
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Job:
1 Computational Biologist and 1 Molecular Biologist
computational biology
molecular biology
RNA
r-loop
ncRNA
Job
6.3 years ago
l.brown
▴ 10
2
votes
1
reply
1.9k
views
Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37
transcripts
biotype
biomaRt
ncrna
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
sergio.martinezcuesta
▴ 10
1
vote
0
replies
1.6k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
8.8 years ago
m.fletcher
▴ 20
0
votes
1
reply
1.4k
views
ncRNA search using biomaRt
biomart
ncrna
updated 9.4 years ago by
Thomas Maurel
▴ 800 • written 9.4 years ago by
Zhang,Jiexin
▴ 20
3
votes
10
replies
5.1k
views
Getting a list of all tRNA encoding genes for an organism?
trna
ncrna
genomicfeatures
featuredb
biomart
updated 9.9 years ago by
Hervé Pagès
16k • written 9.9 years ago by
Keith Hughitt
▴ 180
5 results • Page
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Answer: cameraPR() non directional test
by
Gordon Smyth
52k
Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …
Answer: WGCNA with paired samples
by
Ivo
• 0
You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …
Answer: Plot title for PCA in DESeq2
by
ATpoint
★ 4.7k
The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
Comment: DESeq2 It is correct to use interaction term for patient variability?
by
Bradley
• 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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