Bioconductor Network analysis

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wgcna network analysis network correlation coexpression

updated 4.0 years ago by Lluís Revilla Sancho ▴ 760 • written 8.3 years ago by jol.espinoz ▴ 40

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1.3k

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EGAD_1.16.0 EGAD R network analysis

updated 2.8 years ago by Andrés • 0 • written 4.4 years ago by m4rc.b3ringer • 0

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wgcna network analysis

4.8 years ago jwilliamblamer • 0

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1.2k

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bioinformatician job bioinformatics scientist cancer genomics biostatistics network analysis Job

6.1 years ago marschaefer • 0

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WGCNA network analysis Sign

7.3 years ago • updated 6.6 years ago aurora.savino ▴ 10

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LRT co-expression network deseq2 time course experiment network analysis

updated 19 months ago by Jennifer Dehner • 0 • written 6.8 years ago by aishu.jp ▴ 30

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wgcna network analysis pathway analysis

7.5 years ago panagiotis.mokos ▴ 40

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WGCNA rcytoscape network analysis

updated 8.5 years ago by Paul Shannon ▴ 470 • written 8.5 years ago by christopher.clarskon15 ▴ 20

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ppi network analysis igraph

8.6 years ago Abhishek Pratap ▴ 190

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1.3k

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systemsbiology network analysis drugvsdisease Job

8.6 years ago jing.tang • 0

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1.6k

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postdoc bioinformatics network analysis australia systemsbiology Job

8.7 years ago david.lynn • 0

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3.1k

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network analysis

updated 9.3 years ago by remy.c.nicolle ▴ 10 • written 9.3 years ago by Aaerp ▴ 40

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BioNet bioconductor affymetrixchip network analysis

9.8 years ago svlachavas ▴ 840

13 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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