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Showing :
ontology
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4
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5.1k
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Is there any description available for KEGG Pathway Edge Types
KEGG
SystemsBiology
KEGGgraph
ontology
3.0 years ago
Wuschel
▴ 10
1
vote
0
replies
1.4k
views
adjusted p-values with topGO elim.KS method
topGO
Ontology
DifferentialExpression
3.1 years ago
Kevin Gregory
▴ 10
1
vote
2
replies
1.1k
views
gene ontologies for a set of genes
gene
ontology
4.2 years ago
Bogdan
▴ 670
1
vote
5
replies
2.0k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 5.6 years ago by
Gordon Smyth
53k • written 5.6 years ago by
babak.loghmani
▴ 20
3
votes
3
replies
1.8k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
t.bergmann
• 0
1
vote
1
reply
1.5k
views
News:
Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology
go
ontology
bioinformatics
genomics
News
7.1 years ago
laurent.albou
• 0
3
votes
3
replies
1.5k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 7.1 years ago by
apkmirrorproject
• 0 • written 7.1 years ago by
marcinjoachimiak
▴ 10
7 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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