Bioconductor Ontology

Showing : ontology • reset

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5.5k

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KEGG SystemsBiology KEGGgraph ontology

3.3 years ago Wuschel ▴ 10

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1.5k

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topGO Ontology DifferentialExpression

3.3 years ago Kevin Gregory ▴ 10

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1.2k

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gene ontology

4.5 years ago Bogdan ▴ 670

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2.1k

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ontology edger limma ncbi organism package

updated 5.9 years ago by Gordon Smyth 53k • written 5.9 years ago by babak.loghmani ▴ 20

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1.9k

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go topGO gene ontology enrichment

updated 6.6 years ago by James W. MacDonald 68k • written 6.6 years ago by t.bergmann • 0

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1.6k

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gene ontology go ontology bioinformatics genomics News

7.3 years ago laurent.albou • 0

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1.6k

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GO ontology GO.db

updated 7.4 years ago by apkmirrorproject • 0 • written 7.4 years ago by marcinjoachimiak ▴ 10

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Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by TikTs3a3ssalpc • 0

In the Gviz package, individual exon styles like line width or font color are usually global, much like how the Massar Service centralizes …

Comment: limpa analysis advice by Gordon Smyth 53k

I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…

Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k

As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…

Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k

Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…

Votes

C: AnnotationForge makeOrgPackage rsqlite_send_query error

Answer: Limpa Pipeline Order

Answer: Array weights in dpcDE

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

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