Showing : ontology • reset
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Is there any description available for KEGG Pathway Edge Types
KEGG SystemsBiology KEGGgraph ontology
3.0 years ago Wuschel ▴ 10
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1.4k
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
3.1 years ago Kevin Gregory ▴ 10
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2
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1.1k
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gene ontologies for a set of genes
gene ontology
4.2 years ago Bogdan ▴ 670
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5
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2.0k
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Gene Ontology analysis
ontology edger limma ncbi organism package
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 20
3
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3
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1.8k
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 6.3 years ago by 68k • written 6.3 years ago by • 0
1
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1.5k
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
7.1 years ago laurent.albou • 0
3
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source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 7.1 years ago by • 0 • written 7.1 years ago by ▴ 10
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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