Showing : organism • reset
2
votes
3
replies
2.1k
views
How to get position for each gene ID/gene symbol instead of position for each transcript
Organism PROcess biomaRt GenomicFeatures Organism PROcess biomaRt GenomicFeatures
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ★ 1.0k
2
votes
4
replies
2.7k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 10.9 years ago by ★ 3.9k • written 10.9 years ago by ▴ 140
1
vote
1
reply
1.8k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 80
1
vote
4
replies
1.8k
views
Consensus sequence
Organism
updated 9.6 years ago by 16k • written 9.6 years ago by 65k
1
vote
3
replies
1.7k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 10.7 years ago by ★ 7.2k • written 10.7 years ago by ▴ 220
1
vote
3
replies
2.4k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 40
0
votes
4
replies
1.3k
views
Annotation data package is not being created
Annotation Organism PROcess Annotation Organism PROcess
updated 20.4 years ago by ★ 2.9k • written 20.4 years ago by ▴ 70
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.4 years ago by ▴ 190 • written 17.4 years ago by ★ 2.9k
0
votes
4
replies
4.3k
views
An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 20
0
votes
1
reply
1.1k
views
AnnBuilder links to unigene
GO Organism AnnBuilder PROcess GO Organism AnnBuilder PROcess
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 160
0
votes
3
replies
1.5k
views
AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 19.6 years ago by ★ 2.9k • written 19.6 years ago by ▴ 90
0
votes
0
replies
756
views
Problems with installning a package built with AnnBuilder
Annotation Organism Annotation Organism
19.5 years ago Johan Lindberg ▴ 270
0
votes
7
replies
1.5k
views
I have trouble running the AnnBuilder Vignette
Cancer Organism AnnBuilder Cancer Organism AnnBuilder
updated 19.5 years ago by 65k • written 19.5 years ago by ★ 2.0k
0
votes
1
reply
990
views
bug in resourcerer2BioC in Resourcerer package
Organism Resourcerer Organism Resourcerer
updated 19.4 years ago by ★ 2.9k • written 19.4 years ago by ★ 1.3k
0
votes
0
replies
1.1k
views
loading SMD...
Cancer Breast Organism probe Category Cancer Breast Organism probe Category
19.9 years ago Mayte Suarez-Farinas ▴ 300
0
votes
1
reply
1.4k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges Rsubread easyRNASeq GO
updated 10.4 years ago by ▴ 320 • written 10.4 years ago by 50k
0
votes
4
replies
1.0k
views
missing AnnBuilder parser
Annotation Organism annotate AnnBuilder Annotation Organism annotate AnnBuilder
updated 19.1 years ago by ★ 2.9k • written 19.1 years ago by ★ 1.3k
0
votes
2
replies
1.4k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 19.1 years ago by ★ 13k • written 19.1 years ago by ▴ 540
0
votes
1
reply
1.2k
views
organism = mouse or Mus Musculus in AnnBuilder
Microarray Organism Mus musculus AnnBuilder Microarray Organism Mus musculus AnnBuilder
updated 18.9 years ago by ★ 2.9k • written 18.9 years ago by ▴ 140
0
votes
4
replies
1.0k
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 250
0
votes
1
reply
556
views
AnnBuilder/ABPkgBuilder
Cancer Organism Cancer Organism
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ★ 2.9k
0
votes
2
replies
857
views
AnnBuilder problem?
Organism Biobase annotate AnnBuilder Organism Biobase annotate AnnBuilder
updated 18.5 years ago by ▴ 780 • written 18.5 years ago by ▴ 50
0
votes
1
reply
900
views
Resourcerer warnings
GO Organism reposTools AnnBuilder Resourcerer GO Organism reposTools AnnBuilder
18.5 years ago Francois Pepin ★ 1.3k
0
votes
1
reply
826
views
help aobut AnnBuilder
GO Organism AnnBuilder GO Organism AnnBuilder
updated 18.3 years ago by ▴ 780 • written 18.3 years ago by ▴ 30
0
votes
1
reply
697
views
Error with AnnBuilder ABPkgBuilder
GO Organism annotate AnnBuilder GO Organism annotate AnnBuilder
updated 18.3 years ago by ▴ 780 • written 18.3 years ago by ▴ 20
0
votes
4
replies
1.3k
views
Error while using AnnBuilder
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 18.2 years ago by ★ 7.4k • written 18.3 years ago by ▴ 160
0
votes
1
reply
846
views
AnnBuilder error
GO Organism annotate AnnBuilder GO Organism annotate AnnBuilder
updated 18.2 years ago by ▴ 780 • written 18.2 years ago by ▴ 510
0
votes
2
replies
1.1k
views
AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 18.1 years ago by ▴ 780 • written 18.1 years ago by ★ 1.4k
0
votes
7
replies
1.6k
views
annotation package for chicken affyprobes
Annotation Organism Gallus gallus probe AnnBuilder Annotation Organism Gallus gallus probe
updated 17.7 years ago by ▴ 180 • written 17.7 years ago by ▴ 870
0
votes
0
replies
776
views
Comparing to background
Organism vsn limma Organism vsn limma
17.4 years ago Sturgill, David NIH/NIDDK [C] ▴ 10
0
votes
0
replies
755
views
Re: MetaData 1.6.0
Annotation GO Organism hgu95av2 mguatlas5k mgug4121a rgug4130a probe Category Annotation
19.9 years ago John Zhang ★ 2.9k
0
votes
4
replies
1.3k
views
cluster a set of genes based on another set of genes
Organism limma Organism limma
updated 17.2 years ago by ▴ 280 • written 17.2 years ago by ▴ 450
0
votes
2
replies
1.1k
views
ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"
GO Cancer Organism AnnBuilder GO Cancer Organism AnnBuilder
updated 17.3 years ago by 16k • written 17.3 years ago by ★ 2.9k
0
votes
1
reply
735
views
Problem with ABPkgBuilder function
Annotation GO Organism applera Annotation GO Organism applera
updated 19.1 years ago by ★ 2.9k • written 19.1 years ago by ▴ 500
0
votes
3
replies
1.2k
views
Building the tomato annotation library(Affy)
Annotation Organism AnnBuilder Annotation Organism AnnBuilder
17.0 years ago Groot, Philip de ▴ 630
0
votes
1
reply
724
views
problem with annbuilder
Annotation Organism AnnBuilder Annotation Organism AnnBuilder
updated 16.9 years ago by ▴ 70 • written 16.9 years ago by ▴ 10
0
votes
5
replies
1.4k
views
AnnBuilder problem with custom List of genes
Annotation Organism probe AnnBuilder Annotation Organism probe AnnBuilder
16.7 years ago claudio.is@libero.it ▴ 210
0
votes
2
replies
1.1k
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 130
0
votes
0
replies
679
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
16.6 years ago Lyudmila Mikhaylova ▴ 20
0
votes
2
replies
1.1k
views
AnnBuilder: problem with kegg url?
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 16.6 years ago by ★ 7.2k • written 16.6 years ago by ▴ 20
0
votes
0
replies
821
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
16.6 years ago Yihuan Xu ▴ 130
0
votes
5
replies
1.5k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ★ 1.1k
0
votes
0
replies
1.8k
views
Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
16.5 years ago McGee, Monnie ▴ 300
0
votes
8
replies
1.2k
views
Help with base file in AnnBuilder
Annotation Organism Annotation Organism
updated 16.5 years ago by 65k • written 16.5 years ago by ▴ 410
0
votes
3
replies
1.6k
views
CGHcall error
Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC
updated 16.2 years ago by ★ 2.4k • written 16.2 years ago by ▴ 110
0
votes
1
reply
1.2k
views
Is it possible to use RMA on Agilent Data
Organism Arabidopsis thaliana probe affy oligo Organism Arabidopsis thaliana probe affy
updated 16.1 years ago by ★ 1.3k • written 16.1 years ago by ▴ 110
0
votes
1
reply
946
views
ABPkgBuilder question
Organism AnnBuilder Organism AnnBuilder
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 40
0
votes
2
replies
1.3k
views
GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 15.7 years ago by ▴ 220 • written 15.7 years ago by ★ 7.2k
0
votes
3
replies
832
views
Finding Annotation of CEL file formats
Organism probe Organism probe
updated 15.6 years ago by ★ 3.9k • written 15.6 years ago by ▴ 230
0
votes
0
replies
842
views
ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"
GO Organism AnnBuilder GO Organism AnnBuilder
17.3 years ago Martin Kircher ▴ 20
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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