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overlap
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2
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8
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5.3k
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GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges
overlap
intersect
findoverlaps
6.3 years ago
Caroline Grisbach Meissner
▴ 10
2
votes
10
replies
2.2k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
madsheilskov
▴ 10
4
votes
3
replies
2.1k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
anastasiya-terskih
▴ 10
0
votes
2
replies
1.9k
views
WGCNA multiple data sets overlapping analysis
wgcna
multiple data sets
overlap
updated 7.0 years ago by
Peter Langfelder
★ 3.0k • written 7.0 years ago by
2323982403
▴ 60
5
votes
2
replies
1.9k
views
How to extract positions present in one genomic ranges object and not the other?
genomicranges
r
overlap
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
Grinch
• 0
0
votes
2
replies
1.7k
views
Properly constructing a hypergeometric test
overrepresentation
overlap
R
hypergeometric
updated 19 months ago by
ATpoint
★ 4.1k • written 19 months ago by
charles.foster
▴ 160
0
votes
1
reply
1.4k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.4 years ago by
balajee
• 0 • written 8.4 years ago by
madsheilskov
▴ 10
1
vote
5
replies
1.3k
views
Obtain the specific range that overlap
overlap
genomicranges
range
7.4 years ago
julrodr80
▴ 30
0
votes
0
replies
634
views
How to overlap heatmaps on Gviz?
Givz
heatmap
overlap
combine information
4.0 years ago
kris.petrini
• 0
9 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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