Showing : pacbio • reset
0
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Rsubread - sublong function
pacbio sublong Rsubread
22 days ago thomas.heigl.ibk • 0
0
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2
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776
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Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 23 months ago by • 0
0
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1
reply
1.9k
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How to read in PacBio .bam.pbi file
pacbio pbi
6.5 years ago Frocha ▴ 20
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28
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3.6k
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Job: Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq data integration single-cell pacbio across species Job
6.6 years ago bgee • 0
4
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3
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1.7k
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The ShortRead package does not handle quality score '~' (Q=93) found in PacBio fastq files
shortread pacbio fastq
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 50
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5
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2.2k
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Gviz - display/indicate soft-clipped bases - indicate supplementary alignments
gviz bam pacbio
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by • 0
6 results • Page 1 of 1
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Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0
Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…
Comment: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k
Agree. > for library size and the average transcript length, what additional components will dds <- DESeq(dds) continue to normalize? Will…
Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k
> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k
`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…
Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0
Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…
Votes
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Answer: DESeq Input from Salmon + tximport/tximeta
Answer: featureCounts segmentation fault with large chromosomes
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