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pairwisealignment
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1.6k
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
7.2 years ago
ktehmsen
• 0
0
votes
3
replies
2.0k
views
How to find multiple overlaps with pairwiseAlignment()?
biostrings
pairwisealignment
updated 7.7 years ago by
Hervé Pagès
16k • written 7.7 years ago by
kgorczak
▴ 10
0
votes
4
replies
1.9k
views
Query with Biostrings pairwise alignment output positon
biostrings
alignment
pairwisealignment
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
dhwani2410
• 0
1
vote
2
replies
4.4k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
8.7 years ago
lordbleys
• 0
0
votes
0
replies
1.4k
views
Translate to aminoacid, align pairwise and un-translate back to DNA
translation
pairwisealignment
9.2 years ago
igferres
• 0
0
votes
1
reply
1.2k
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 9.3 years ago by
Hervé Pagès
16k • written 9.3 years ago by
oliwindram
▴ 10
3
votes
3
replies
2.3k
views
pairwiseAlignments coordinate mapping?
biostrings
pairwisealignment
updated 5 months ago by
rohitsatyam102
▴ 20 • written 9.4 years ago by
Steve Lianoglou
★ 13k
2
votes
1
reply
1.4k
views
Error in score() function on pairwiseAlignment()
biostrings
pairwisealignment
updated 9.5 years ago by
shepherl
4.2k • written 9.5 years ago by
jdydu
• 0
0
votes
1
reply
1.6k
views
pairwiseAlignment() - Similarity NA% ?
biostrings
pairwisealignment
updated 10.0 years ago by
Hervé Pagès
16k • written 10.0 years ago by
boris.steipe
• 0
2
votes
3
replies
1.5k
views
indels located at the edges of subject and Biostrings pairwiseAlignment function
pairwisealignment
biostrings
10.1 years ago
vincent.plagnol
▴ 10
0
votes
2
replies
2.1k
views
inconsistent pairwiseAlignment behaviour (Biostrings) with multiple alignments with identical scores
biostrings
pairwisealignment
10.1 years ago
vincent.plagnol
▴ 10
4
votes
5
replies
3.4k
views
global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
Biostrings
pairwiseAlignment
updated 11.0 years ago by
Hervé Pagès
16k • written 11.0 years ago by
branislav misovic
▴ 120
12 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
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