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pairwisealignment
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1.8k
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
7.5 years ago
ktehmsen
• 0
0
votes
3
replies
2.1k
views
How to find multiple overlaps with pairwiseAlignment()?
biostrings
pairwisealignment
updated 8.1 years ago by
Hervé Pagès
16k • written 8.1 years ago by
kgorczak
▴ 10
0
votes
4
replies
2.1k
views
Query with Biostrings pairwise alignment output positon
biostrings
alignment
pairwisealignment
updated 8.2 years ago by
Hervé Pagès
16k • written 8.2 years ago by
dhwani2410
• 0
1
vote
2
replies
4.6k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
9.0 years ago
lordbleys
• 0
0
votes
0
replies
1.5k
views
Translate to aminoacid, align pairwise and un-translate back to DNA
translation
pairwisealignment
9.5 years ago
igferres
• 0
0
votes
1
reply
1.3k
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 9.6 years ago by
Hervé Pagès
16k • written 9.6 years ago by
oliwindram
▴ 10
3
votes
3
replies
2.5k
views
pairwiseAlignments coordinate mapping?
biostrings
pairwisealignment
updated 9 months ago by
rohitsatyam102
▴ 20 • written 9.7 years ago by
Steve Lianoglou
★ 13k
2
votes
1
reply
1.4k
views
Error in score() function on pairwiseAlignment()
biostrings
pairwisealignment
updated 9.8 years ago by
shepherl
4.3k • written 9.8 years ago by
jdydu
• 0
0
votes
1
reply
1.6k
views
pairwiseAlignment() - Similarity NA% ?
biostrings
pairwisealignment
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
boris.steipe
• 0
2
votes
3
replies
1.6k
views
indels located at the edges of subject and Biostrings pairwiseAlignment function
pairwisealignment
biostrings
10.4 years ago
vincent.plagnol
▴ 10
0
votes
2
replies
2.1k
views
inconsistent pairwiseAlignment behaviour (Biostrings) with multiple alignments with identical scores
biostrings
pairwisealignment
10.4 years ago
vincent.plagnol
▴ 10
4
votes
5
replies
3.6k
views
global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
Biostrings
pairwiseAlignment
updated 11.3 years ago by
Hervé Pagès
16k • written 11.3 years ago by
branislav misovic
▴ 120
12 results • Page
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Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2
by
colinmccornack
• 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
by
Erik Wright
▴ 150
This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…
Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Votes
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
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