Showing : plier • reset
0
votes
0
replies
1.1k
views
Affymetrix gene st array - ok to do statistics on Category:Main only?
limma plier oligo limma plier oligo
12.4 years ago Martin O'Hare ▴ 10
0
votes
0
replies
1.2k
views
FARMS package (fwd)
Microarray Normalization cdf plier farms Microarray Normalization cdf plier farms
12.4 years ago Günter Klambauer ▴ 540
0
votes
0
replies
868
views
plier package
Normalization cdf plier Normalization cdf plier
12.5 years ago fire1976 wyoming ▴ 380
0
votes
0
replies
875
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy plier xps cdf affy plier xps
12.6 years ago cstrato ★ 3.9k
0
votes
1
reply
1.3k
views
No changes between Groups using GeneST Arrays from Affymetrix
GO vsn plier GO vsn plier
updated 14.7 years ago by ▴ 230 • written 14.7 years ago by ▴ 830
0
votes
1
reply
1.4k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.1 years ago by ▴ 140 • written 16.1 years ago by 67k
0
votes
2
replies
1.2k
views
Prokaryotic_Rhodobacter capsulatus GEP
cdf plier cdf plier
updated 16.1 years ago by 25k • written 16.1 years ago by ▴ 140
0
votes
1
reply
1.3k
views
Normalization Recommendations- severe biological variation (from the digest)
Normalization vsn plier Normalization vsn plier
updated 16.5 years ago by ★ 6.0k • written 16.5 years ago by ▴ 20
0
votes
3
replies
1.1k
views
Standard error in summarization ExpressionSets
plier plier
updated 16.6 years ago by 67k • written 16.6 years ago by ▴ 10
0
votes
0
replies
960
views
plier using reference set normalization
Normalization plier RefPlus Normalization plier RefPlus
16.9 years ago Roumyana Yordanova ▴ 110
0
votes
3
replies
1.3k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene
plier plier
updated 16.9 years ago by ★ 2.4k • written 16.9 years ago by ▴ 30
0
votes
0
replies
1.1k
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
17.3 years ago Wolfgang Raffelsberger ▴ 160
0
votes
4
replies
1.5k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 17.4 years ago by 67k • written 17.4 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 17.4 years ago by ▴ 120 • written 17.4 years ago by ▴ 10
0
votes
0
replies
851
views
justPlier() on UNIX
plier plier
17.6 years ago Pickard, Mike ▴ 10
0
votes
6
replies
1.6k
views
Affy EXON Array: iterPLIER or RMA
Cancer plier Cancer plier
updated 17.7 years ago by 67k • written 17.7 years ago by ★ 1.9k
0
votes
1
reply
1.3k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 17.9 years ago by 67k • written 17.9 years ago by ▴ 320
0
votes
0
replies
915
views
questions on BioC's implementation of plier
Normalization plier Normalization plier
18.0 years ago Jenny Drnevich ★ 2.2k
0
votes
2
replies
1.6k
views
results of justPlier vs. RMA
Clustering affy plier affyio Clustering affy plier affyio
updated 18.1 years ago by ▴ 120 • written 18.2 years ago by ▴ 360
0
votes
1
reply
969
views
Mismatch probe handling for exon arrays
Cancer Breast probe affy plier Cancer Breast probe affy plier
updated 18.2 years ago by 67k • written 18.2 years ago by ▴ 310
0
votes
2
replies
1.2k
views
plier error
plier plier
updated 18.3 years ago by ★ 1.1k • written 18.4 years ago by ▴ 360
0
votes
0
replies
793
views
help with justPlier
plier plier
18.4 years ago He, Yiwen NIH/CIT ▴ 360
0
votes
8
replies
2.2k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 520
0
votes
2
replies
862
views
Affymetrix question
plier plier
updated 19.2 years ago by 67k • written 19.2 years ago by ▴ 50
0
votes
5
replies
1.6k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 19.2 years ago by ★ 1.1k • written 19.2 years ago by ▴ 60
0
votes
0
replies
970
views
PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
19.2 years ago Matthew Hannah ▴ 940
0
votes
1
reply
970
views
PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 19.2 years ago by 67k • written 19.2 years ago by ▴ 80
0
votes
1
reply
855
views
Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn gcrma matchprobes plier vsn gcrma matchprobes plier
updated 19.4 years ago by 67k • written 19.4 years ago by ▴ 350
0
votes
0
replies
1.5k
views
NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
19.5 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
2
replies
1.1k
views
PLIER: two questions
plier plier
updated 19.5 years ago by ★ 1.8k • written 19.5 years ago by ▴ 380
0
votes
3
replies
1.2k
views
Anyone get plier to install on OS X?
plier plier
19.6 years ago Ken Termiso ▴ 250
0
votes
1
reply
843
views
PLIER -- low values?
Microarray plier Microarray plier
updated 19.6 years ago by 67k • written 19.6 years ago by ▴ 190
0
votes
1
reply
973
views
plier crashes with 51 CEL files
gcrma PROcess plier gcrma PROcess plier
19.8 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
0
replies
725
views
Re:PLIER wierd Mvs A
plier plier
19.9 years ago Anthony Bosco ▴ 20
0
votes
1
reply
1.2k
views
PLIER Error
plier plier
updated 19.9 years ago by ★ 1.1k • written 19.9 years ago by ▴ 500
0
votes
0
replies
913
views
PLIER
plier plier
19.9 years ago Crispin Miller ★ 1.1k
0
votes
0
replies
905
views
MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization probe affycomp plier Normalization probe affycomp plier
19.9 years ago Ariel Chernomoretz ▴ 380
0
votes
2
replies
1.0k
views
Affy PLIER
plier plier
updated 20.2 years ago by ★ 2.3k • written 20.2 years ago by ★ 1.4k
0
votes
1
reply
1.2k
views
PLIER is available as open source
plier SANTA plier SANTA
updated 20.2 years ago by ▴ 50 • written 20.2 years ago by ▴ 50
0
votes
3
replies
2.8k
views
what normalization method does mas5 use
Normalization GO affy gcrma plier Normalization GO affy gcrma plier
updated 20.5 years ago by ▴ 100 • written 20.5 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Question regarding bg correction/normalization/summarization
Normalization Cancer probe affy vsn plier Normalization Cancer probe affy vsn plier
20.5 years ago Wolfgang Huber ★ 13k
0
votes
2
replies
1.1k
views
Running justRMA on .CEL files in another directory
plier plier
updated 20.6 years ago by ▴ 70 • written 20.6 years ago by ▴ 50
0
votes
0
replies
1.2k
views
median polish vs mas/PLIER info
Microarray Normalization Cancer probe affy GeneSpring PROcess plier Microarray Cancer
20.6 years ago Anthony Bosco ▴ 500
0
votes
1
reply
1.0k
views
AFFY PLIER ALGORITHM
plier plier
20.7 years ago Anthony Bosco ▴ 500
44 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
Awards • All
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to rohitsatyam102 ▴ 20
Popular Question to Hervé Pagès 16k
Teacher to dsull ▴ 40
Locations • All
United States, 3 minutes ago
Sweden, 33 minutes ago
India, 49 minutes ago
United States, 1 hour ago
Sweden, 4 hours ago
Traffic: 625 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6