Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
plier
•
reset
0
votes
0
replies
1.1k
views
Affymetrix gene st array - ok to do statistics on Category:Main only?
limma
plier
oligo
limma
plier
oligo
12.7 years ago
Martin O'Hare
▴ 10
0
votes
0
replies
1.2k
views
FARMS package (fwd)
Microarray
Normalization
cdf
plier
farms
Microarray
Normalization
cdf
plier
farms
12.8 years ago
Günter Klambauer
▴ 540
0
votes
0
replies
896
views
plier package
Normalization
cdf
plier
Normalization
cdf
plier
12.8 years ago
fire1976 wyoming
▴ 380
0
votes
0
replies
912
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf
affy
plier
xps
cdf
affy
plier
xps
12.9 years ago
cstrato
★ 3.9k
0
votes
1
reply
1.3k
views
No changes between Groups using GeneST Arrays from Affymetrix
GO
vsn
plier
GO
vsn
plier
updated 15.0 years ago by
Mike Walter
▴ 230 • written 15.0 years ago by
Benjamin Otto
▴ 830
0
votes
1
reply
1.5k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 16.4 years ago by
dorothyc
▴ 140 • written 16.4 years ago by
James W. MacDonald
68k
0
votes
2
replies
1.2k
views
Prokaryotic_Rhodobacter capsulatus GEP
cdf
plier
cdf
plier
updated 16.4 years ago by
Martin Morgan
25k • written 16.4 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.3k
views
Normalization Recommendations- severe biological variation (from the digest)
Normalization
vsn
plier
Normalization
vsn
plier
updated 16.9 years ago by
Naomi Altman
★ 6.0k • written 16.9 years ago by
Nick Henriquez
▴ 20
0
votes
3
replies
1.1k
views
Standard error in summarization ExpressionSets
plier
plier
updated 16.9 years ago by
James W. MacDonald
68k • written 16.9 years ago by
Rodrigo Santamaría Vicente
▴ 10
0
votes
0
replies
993
views
plier using reference set normalization
Normalization
plier
RefPlus
Normalization
plier
RefPlus
17.2 years ago
Roumyana Yordanova
▴ 110
0
votes
3
replies
1.4k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene
plier
plier
updated 17.2 years ago by
Henrik Bengtsson
★ 2.4k • written 17.2 years ago by
Fang, Hong*
▴ 30
0
votes
0
replies
1.2k
views
problem with function to interrogate x:Map (exonmap)
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
17.6 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
4
replies
1.6k
views
problems rma() with mouse exon affy data in exonmap package
Survival
cdf
genefilter
affy
simpleaffy
plier
exonmap
Survival
cdf
genefilter
affy
updated 17.7 years ago by
James W. MacDonald
68k • written 17.7 years ago by
bruce
▴ 20
0
votes
1
reply
1.3k
views
Exonmap mapping problems
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
updated 17.7 years ago by
Michal Okoniewski
▴ 120 • written 17.7 years ago by
Tore Eriksson
▴ 10
0
votes
0
replies
884
views
justPlier() on UNIX
plier
plier
17.9 years ago
Pickard, Mike
▴ 10
0
votes
6
replies
1.7k
views
Affy EXON Array: iterPLIER or RMA
Cancer
plier
Cancer
plier
updated 18.0 years ago by
James W. MacDonald
68k • written 18.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.4k
views
annaffy errors
GO
Survival
mgu74av2
cdf
annotate
affy
limma
gcrma
matchprobes
annaffy
simpleaffy
plier
updated 18.3 years ago by
James W. MacDonald
68k • written 18.2 years ago by
Ido M. Tamir
▴ 320
0
votes
0
replies
957
views
questions on BioC's implementation of plier
Normalization
plier
Normalization
plier
18.3 years ago
Jenny Drnevich
★ 2.2k
0
votes
2
replies
1.7k
views
results of justPlier vs. RMA
Clustering
affy
plier
affyio
Clustering
affy
plier
affyio
updated 18.5 years ago by
Michal Okoniewski
▴ 120 • written 18.5 years ago by
He, Yiwen NIH/CIT
▴ 360
0
votes
1
reply
1.0k
views
Mismatch probe handling for exon arrays
Cancer
Breast
probe
affy
plier
Cancer
Breast
probe
affy
plier
updated 18.6 years ago by
James W. MacDonald
68k • written 18.6 years ago by
Steven McKinney
▴ 310
0
votes
2
replies
1.2k
views
plier error
plier
plier
updated 18.7 years ago by
Crispin Miller
★ 1.1k • written 18.7 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
0
replies
829
views
help with justPlier
plier
plier
18.7 years ago
He, Yiwen NIH/CIT
▴ 360
0
votes
8
replies
2.3k
views
error message in gcrma
cdf
affy
gcrma
matchprobes
plier
cdf
affy
gcrma
matchprobes
plier
updated 18.9 years ago by
Seth Falcon
★ 7.4k • written 18.9 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
2
replies
906
views
Affymetrix question
plier
plier
updated 19.5 years ago by
James W. MacDonald
68k • written 19.5 years ago by
lucia ¿?
▴ 50
0
votes
5
replies
1.7k
views
PLIER affinities redux
cdf
probe
Biobase
affy
plier
cdf
probe
Biobase
affy
plier
updated 19.5 years ago by
Crispin Miller
★ 1.1k • written 19.5 years ago by
Jeremy Gollub
▴ 60
0
votes
0
replies
1.0k
views
PLIER affinities redux
ath1121501
cdf
probe
Biobase
affy
plier
ath1121501
cdf
probe
Biobase
affy
plier
19.5 years ago
Matthew Hannah
▴ 940
0
votes
1
reply
1.0k
views
PLIER affinities
rae230a
cdf
probe
reposTools
affy
plier
rae230a
cdf
probe
reposTools
affy
plier
updated 19.5 years ago by
James W. MacDonald
68k • written 19.6 years ago by
Jeremy Gollub
▴ 80
0
votes
1
reply
902
views
Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn
gcrma
matchprobes
plier
vsn
gcrma
matchprobes
plier
updated 19.7 years ago by
James W. MacDonald
68k • written 19.7 years ago by
Jordi Altirriba Gutiérrez
▴ 350
0
votes
0
replies
1.5k
views
NA values
Normalization
Cancer
limma
gcrma
affyPLM
limmaGUI
plier
Normalization
Cancer
limma
gcrma
19.8 years ago
Brooke-Powell, Elizabeth
▴ 170
0
votes
2
replies
1.2k
views
PLIER: two questions
plier
plier
updated 19.8 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 19.8 years ago by
Ariel Chernomoretz
▴ 380
0
votes
3
replies
1.3k
views
Anyone get plier to install on OS X?
plier
plier
19.9 years ago
Ken Termiso
▴ 250
0
votes
1
reply
881
views
PLIER -- low values?
Microarray
plier
Microarray
plier
updated 19.9 years ago by
James W. MacDonald
68k • written 19.9 years ago by
Tarun Nayar
▴ 190
0
votes
1
reply
1.0k
views
plier crashes with 51 CEL files
gcrma
PROcess
plier
gcrma
PROcess
plier
20.1 years ago
Adaikalavan Ramasamy
★ 1.8k
0
votes
0
replies
755
views
Re:PLIER wierd Mvs A
plier
plier
20.2 years ago
Anthony Bosco
▴ 20
0
votes
1
reply
1.2k
views
PLIER Error
plier
plier
updated 20.2 years ago by
Crispin Miller
★ 1.1k • written 20.2 years ago by
Anthony Bosco
▴ 500
0
votes
0
replies
941
views
PLIER
plier
plier
20.2 years ago
Crispin Miller
★ 1.1k
0
votes
0
replies
937
views
MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization
probe
affycomp
plier
Normalization
probe
affycomp
plier
20.2 years ago
Ariel Chernomoretz
▴ 380
0
votes
2
replies
1.1k
views
Affy PLIER
plier
plier
updated 20.5 years ago by
Rafael A. Irizarry
★ 2.3k • written 20.5 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
1.3k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 20.6 years ago by
Francois Collin
▴ 50 • written 20.6 years ago by
Lelivelt, Mike
▴ 50
0
votes
3
replies
3.0k
views
what normalization method does mas5 use
Normalization
GO
affy
gcrma
plier
Normalization
GO
affy
gcrma
plier
updated 20.8 years ago by
F Duan
▴ 100 • written 20.8 years ago by
Brian Bennett
▴ 10
0
votes
0
replies
1.1k
views
Question regarding bg correction/normalization/summarization
Normalization
Cancer
probe
affy
vsn
plier
Normalization
Cancer
probe
affy
vsn
plier
20.8 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
1.1k
views
Running justRMA on .CEL files in another directory
plier
plier
updated 20.9 years ago by
donghu@itsa.ucsf.edu
▴ 70 • written 20.9 years ago by
PARK,CHRISTOPHER CHANGSUN
▴ 50
0
votes
0
replies
1.3k
views
median polish vs mas/PLIER info
Microarray
Normalization
Cancer
probe
affy
GeneSpring
PROcess
plier
Microarray
Cancer
21.0 years ago
Anthony Bosco
▴ 500
0
votes
1
reply
1.1k
views
AFFY PLIER ALGORITHM
plier
plier
21.1 years ago
Anthony Bosco
▴ 500
44 results • Page
1 of 1
Recent ...
Replies
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2
by
ATpoint
★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness
by
ATpoint
★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.6k
Popular Question
to
etiennedanis
• 0
Popular Question
to
javier.ruizramirez
• 0
Autobiographer
to
Paul Harrison
▴ 100
Popular Question
to
mohammedtoufiq91
▴ 10
Locations
• All
United Kingdom,
7 minutes ago
United States,
24 minutes ago
Moldova,
39 minutes ago
United States,
44 minutes ago
Portugal,
48 minutes ago
Traffic: 967 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6