Showing : plier • reset
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Affymetrix gene st array - ok to do statistics on Category:Main only?
limma plier oligo limma plier oligo
11.7 years ago Martin O'Hare ▴ 10
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FARMS package (fwd)
Microarray Normalization cdf plier farms Microarray Normalization cdf plier farms
11.8 years ago Günter Klambauer ▴ 540
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plier package
Normalization cdf plier Normalization cdf plier
11.8 years ago fire1976 wyoming ▴ 380
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XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy plier xps cdf affy plier xps
11.9 years ago cstrato ★ 3.9k
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1
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No changes between Groups using GeneST Arrays from Affymetrix
GO vsn plier GO vsn plier
updated 14.1 years ago by ▴ 230 • written 14.1 years ago by ▴ 830
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1
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1.3k
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
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2
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1.0k
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Prokaryotic_Rhodobacter capsulatus GEP
cdf plier cdf plier
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 140
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1
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1.2k
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Normalization Recommendations- severe biological variation (from the digest)
Normalization vsn plier Normalization vsn plier
updated 15.9 years ago by ★ 6.0k • written 15.9 years ago by ▴ 20
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3
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962
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Standard error in summarization ExpressionSets
plier plier
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 10
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849
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plier using reference set normalization
Normalization plier RefPlus Normalization plier RefPlus
16.2 years ago Roumyana Yordanova ▴ 110
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3
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1.2k
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RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene
plier plier
updated 16.2 years ago by ★ 2.4k • written 16.2 years ago by ▴ 30
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0
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954
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problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
16.7 years ago Wolfgang Raffelsberger ▴ 160
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4
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1.3k
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problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 20
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1
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Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 10
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0
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766
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justPlier() on UNIX
plier plier
16.9 years ago Pickard, Mike ▴ 10
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6
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1.4k
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Affy EXON Array: iterPLIER or RMA
Cancer plier Cancer plier
updated 17.0 years ago by 65k • written 17.0 years ago by ★ 1.9k
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1
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1.2k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 320
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824
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questions on BioC's implementation of plier
Normalization plier Normalization plier
17.3 years ago Jenny Drnevich ★ 2.2k
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2
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1.5k
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results of justPlier vs. RMA
Clustering affy plier affyio Clustering affy plier affyio
updated 17.5 years ago by ▴ 120 • written 17.5 years ago by ▴ 360
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1
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868
views
Mismatch probe handling for exon arrays
Cancer Breast probe affy plier Cancer Breast probe affy plier
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 310
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2
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1.1k
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plier error
plier plier
updated 17.7 years ago by ★ 1.1k • written 17.7 years ago by ▴ 360
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0
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709
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help with justPlier
plier plier
17.7 years ago He, Yiwen NIH/CIT ▴ 360
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8
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1.8k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 520
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2
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776
views
Affymetrix question
plier plier
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 50
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5
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1.5k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 18.6 years ago by ★ 1.1k • written 18.6 years ago by ▴ 60
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PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
18.6 years ago Matthew Hannah ▴ 940
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1
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884
views
PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 18.6 years ago by 65k • written 18.6 years ago by ▴ 80
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1
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755
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Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn gcrma matchprobes plier vsn gcrma matchprobes plier
updated 18.7 years ago by 65k • written 18.7 years ago by ▴ 350
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0
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1.3k
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NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
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2
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965
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PLIER: two questions
plier plier
updated 18.8 years ago by ★ 1.8k • written 18.8 years ago by ▴ 380
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3
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1.1k
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Anyone get plier to install on OS X?
plier plier
18.9 years ago Ken Termiso ▴ 250
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1
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749
views
PLIER -- low values?
Microarray plier Microarray plier
updated 19.0 years ago by 65k • written 19.0 years ago by ▴ 190
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1
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869
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plier crashes with 51 CEL files
gcrma PROcess plier gcrma PROcess plier
19.1 years ago Adaikalavan Ramasamy ★ 1.8k
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646
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Re:PLIER wierd Mvs A
plier plier
19.2 years ago Anthony Bosco ▴ 20
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1
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1.1k
views
PLIER Error
plier plier
updated 19.2 years ago by ★ 1.1k • written 19.2 years ago by ▴ 500
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0
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PLIER
plier plier
19.2 years ago Crispin Miller ★ 1.1k
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799
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MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization probe affycomp plier Normalization probe affycomp plier
19.3 years ago Ariel Chernomoretz ▴ 380
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2
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911
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Affy PLIER
plier plier
updated 19.6 years ago by ★ 2.3k • written 19.6 years ago by ★ 1.4k
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1.1k
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PLIER is available as open source
plier SANTA plier SANTA
updated 19.6 years ago by ▴ 50 • written 19.6 years ago by ▴ 50
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3
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2.6k
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what normalization method does mas5 use
Normalization GO affy gcrma plier Normalization GO affy gcrma plier
updated 19.8 years ago by ▴ 100 • written 19.8 years ago by ▴ 10
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0
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941
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Question regarding bg correction/normalization/summarization
Normalization Cancer probe affy vsn plier Normalization Cancer probe affy vsn plier
19.8 years ago Wolfgang Huber ★ 13k
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2
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981
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Running justRMA on .CEL files in another directory
plier plier
updated 20.0 years ago by ▴ 70 • written 20.0 years ago by ▴ 50
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0
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1.1k
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median polish vs mas/PLIER info
Microarray Normalization Cancer probe affy GeneSpring PROcess plier Microarray Cancer
20.0 years ago Anthony Bosco ▴ 500
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1
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915
views
AFFY PLIER ALGORITHM
plier plier
20.1 years ago Anthony Bosco ▴ 500
44 results • Page 1 of 1
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Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Answer: Recovering my account credentials on Bioconductor by shepherl 3.9k
As we will need to exchange some information can you please contact me at bioconductorcoreteam@gmail.com and I can better assist you. Che…
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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