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plotMA
•
reset
1
vote
1
reply
4.9k
views
MA plot in R
rstudio
r
plotMA
6.9 years ago
g.k
• 0
0
votes
2
replies
4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2
rnaseq
plotMA
deseq
rna-seq
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
sjs0282
• 0
3
votes
5
replies
3.7k
views
limma::plotMA displays one sample vs. others
limma
plotMA
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
Lisa Cohen
▴ 50
1
vote
8
replies
2.6k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2
plotma
6.6 years ago
Yvan Wenger
▴ 50
4
votes
3
replies
2.4k
views
[DESeq2] normalization doesn't remove my mean-variance trend
normalization
deseq2
plotMA
meanSDplot
8.7 years ago
aravenscraft
• 0
1
vote
3
replies
1.1k
views
plotMA (DESeq2) Issue
deseq2
plotMA
rnaseq
logfoldchange
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
ap_vc21
• 0
1
vote
2
replies
957
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent
single channel
plotMA
background correction
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
CantExitVIM
▴ 10
0
votes
1
reply
880
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2
plotMA
rnaseq
community analysis
asymmetry
updated 4.2 years ago by
Michael Love
41k • written 4.2 years ago by
chaco001
• 0
1
vote
1
reply
616
views
plotMA difference using or not a sub matrix
matrixsubset
DESeq2
plotMA
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
l.troxler
▴ 10
1
vote
5
replies
612
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 6 months ago by
Michael Love
41k • written 6 months ago by
sara.jacobson
• 0
10 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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Gordon Smyth
50k
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to
Chris
• 0
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to
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