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plotmds
•
reset
1
vote
2
replies
846
views
loading scores using plotMDS in limma
plotMDS
limma
9 months ago
Cen
• 0
1
vote
3
replies
1.9k
views
Making MDS plot
plotMDS
limma
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
liujy4
• 0
2
votes
2
replies
1.3k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
Raito92
▴ 60
2
votes
2
replies
1.2k
views
plotMDS dimensions bug
limma
plotMDS
2.8 years ago
jamie.gearing
▴ 60
2
votes
8
replies
3.8k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.4 years ago by
Gordon Smyth
50k • written 5.4 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
737
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Alexander Azarian
▴ 30
0
votes
0
replies
932
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.2 years ago
Larry K.
• 0
3
votes
7
replies
5.8k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.4 years ago
dacaba.92
▴ 10
4
votes
6
replies
1.5k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
6.6 years ago
fawazfebin
▴ 60
3
votes
1
reply
2.0k
views
column nubering plotMDS
edger
plotmds
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.7k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 7.7 years ago by
Jeff Leek
▴ 650 • written 7.7 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.2k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
8.1 years ago
Adam
• 0
12 results • Page
1 of 1
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Comment: maSigPro genes from clusters
by
anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Koen Van den Berge
▴ 180
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shepherl
3.9k
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Ken C
• 0
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Johannes Rainer
★ 2.0k
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Chris
▴ 10
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