Bioconductor Tmm

Showing : tmm • reset

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469

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TMM limma

5 months ago • updated 4 months ago Nisha • 0

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500

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edgeR SequencingData miRNA TMM Normalization

updated 9 months ago by Gordon Smyth 48k • written 9 months ago by tleona3 • 0

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861

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TMM edgeR qsea MEDIPS

updated 14 months ago by Simon Pearce • 0 • written 14 months ago by a.riediger ▴ 20

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608

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RNASeq Normalization TMM edgeR

updated 16 months ago by Gordon Smyth 48k • written 16 months ago by e.g.w.miller ▴ 10

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1.0k

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csaw edger tmm chipseq

updated 20 months ago by Rory Stark ★ 5.1k • written 20 months ago by maria.soler • 0

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1.3k

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DESeq2 tximport Kallisto TMM edgeR

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by BioNovice247 • 0

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4.3k

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EdgeR normalization fastq txt TMM

updated 19 months ago by Gordon Smyth 48k • written 8.0 years ago by hamidrezarazzaghian • 0

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840

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edgeR DifferentialExpression TMM RNASeq

updated 2.1 years ago by Gordon Smyth 48k • written 2.1 years ago by hamidrezarazzaghian • 0

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715

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diffbind CPM TMM

updated 3.7 years ago by Rory Stark ★ 5.1k • written 3.7 years ago by Guandong Shang ▴ 40

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1.4k

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csaw TMM

4.3 years ago ATpoint ★ 3.6k

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740

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limma TMM differential expression normalization rnaseq

updated 4.6 years ago by James W. MacDonald 64k • written 4.6 years ago by natalia_lt • 0

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1.5k

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edger TMM DEG normalization

updated 4.9 years ago by Gordon Smyth 48k • written 4.9 years ago by rproendo ▴ 20

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1.6k

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TMM deseq2 smallrna rnaseq

updated 5.0 years ago by António Miguel de Jesus Domingues ▴ 490 • written 5.0 years ago by Konstantinos Yeles ▴ 80

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1.8k

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salmon tximport gene length eqtl TMM

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by VSM ▴ 120

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907

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normalization quantile normalization tmm edger

updated 5.8 years ago by Gordon Smyth 48k • written 5.8 years ago by bilcodygm • 0

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5.1k

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limma edger plotmds tmm masigpro

6.0 years ago dacaba.92 ▴ 10

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3.1k

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edgeR tmm normalization counts

updated 6.6 years ago by James W. MacDonald 64k • written 6.6 years ago by jol.espinoz ▴ 40

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2.4k

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differential expression TMM normalization rnaseq edger

6.7 years ago • updated 6.6 years ago aec ▴ 90

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5.0k

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cpm gene expression matrix tmm normailzation

6.8 years ago kkadzi25 • 0

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1.8k

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diffbind chip-seq normalization deseq2 tmm

updated 6.9 years ago by Rory Stark ★ 5.1k • written 6.9 years ago by siklenkak • 0

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2.9k

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TMM normalization edgeR

updated 7.2 years ago by James W. MacDonald 64k • written 7.2 years ago by Sara ▴ 10

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1.7k

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Rory Stark diffbind TMM edgeR chipseq

updated 7.4 years ago by Rory Stark ★ 5.1k • written 7.6 years ago by akdess • 0

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1.2k

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TMM edgeR

7.5 years ago humberto_munoz • 0

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1.8k

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regionCounts TMM csaw

7.5 years ago saadmurtazakhan ▴ 10

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2.9k

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chip-seq TSS TMM csaw

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by saadmurtazakhan ▴ 10

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4.5k

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edgr tmm normalization

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by Assa Yeroslaviz ★ 1.5k

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10k

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rnaseq normalization tpm tmm

8.2 years ago nickbern92 • 0

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2.7k

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matlab calcnormfactors TMM edgeR

updated 8.5 years ago by Gordon Smyth 48k • written 8.5 years ago by katherine.beaulieu14 • 0

28 results • Page 1 of 1

Recent ...

Replies

Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k