Showing : probe • reset
0
votes
0
replies
901
views
Control based normalization
Normalization probe Normalization probe
15.5 years ago Chris Fenton ▴ 80
0
votes
2
replies
1.2k
views
Non-specific filtering for HyperGeometric/GSEA test
probe probe
15.5 years ago Yuan Hao ▴ 30
0
votes
1
reply
1.4k
views
GOstats - zebrafish
Annotation GO zebrafish probe Annotation GO zebrafish probe
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 460
0
votes
3
replies
1.7k
views
Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
15.5 years ago Noah Dowell ▴ 410
0
votes
9
replies
2.4k
views
Romer and symbols2indices query
probe limma probe limma
updated 15.5 years ago by 53k • written 15.5 years ago by ★ 1.0k
0
votes
2
replies
2.2k
views
lumi annotation using nuID, missing gene symbols
Annotation probe annotate lumi Annotation probe annotate lumi
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 170
0
votes
3
replies
2.1k
views
Romer and symbols2indices query
probe limma GSEABase probe limma GSEABase
15.5 years ago Gordon Smyth 53k
0
votes
1
reply
681
views
hugene10stv1probe
probe probe
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 220
0
votes
2
replies
1.0k
views
Regarding hugene10stv1 array
probe probe
15.6 years ago • updated 15.5 years ago sneha patil ▴ 220
0
votes
1
reply
1.2k
views
Question about quantile normalization in normalize.AffyBatch.quantiles
Normalization probe Normalization probe
updated 15.6 years ago by ★ 1.2k • written 15.6 years ago by ▴ 10
0
votes
0
replies
1.8k
views
qPCR event preview - April 2010
miRNA qPCR Normalization probe microRNA cycle miRNA qPCR Normalization probe microRNA
15.6 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
2
replies
2.9k
views
NA/NaN/Inf in foreign function call in mas5calls function
probe affy PROcess probe affy PROcess
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 10
0
votes
3
replies
1.5k
views
how to find the list of probe sets in Affy U133A that correspond to housekeeping genes
Normalization probe affy Normalization probe affy
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 820
0
votes
2
replies
1.2k
views
how to find the probe set ID using different CDF file?
cdf probe affy cdf probe affy
updated 15.6 years ago by ▴ 630 • written 15.6 years ago by ▴ 820
0
votes
1
reply
816
views
Query
cdf probe cdf probe
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 220
0
votes
0
replies
639
views
Get gene expression data by averaging probes corresponding to the gene?
Microarray probe limma convert Microarray probe limma convert
15.6 years ago Gordon Smyth 53k
0
votes
1
reply
1.1k
views
Get gene expression data by averaging probes corresponding to the gene?
Microarray probe convert Microarray probe convert
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 20
0
votes
1
reply
788
views
removing probes from affybatch error
cdf probe affy cdf probe affy
updated 15.6 years ago by 68k • written 15.6 years ago by ★ 2.0k
0
votes
0
replies
1.1k
views
Averaging duplicate probes in an RGList object
Microarray probe limma Microarray probe limma
15.6 years ago Tom Wenseleers ▴ 60
0
votes
2
replies
1.3k
views
what is the website to get gene name from Affy probe set ID?
probe affy probe affy
updated 15.6 years ago by ▴ 220 • written 15.7 years ago by ▴ 820
0
votes
1
reply
1.6k
views
extract intensity values from .cel using Affy probe ids
Normalization probe Normalization probe
updated 15.7 years ago by ★ 2.4k • written 15.7 years ago by ▴ 30
0
votes
1
reply
875
views
regarding making of probe package
probe probe
15.7 years ago sneha patil ▴ 220
0
votes
1
reply
1.2k
views
Cosmo Background model
probe cosmo probe cosmo
15.7 years ago Prashantha Hebbar ▴ 260
0
votes
0
replies
753
views
Cosmo background model
probe cosmo probe cosmo
15.7 years ago Prashantha Hebbar ▴ 260
0
votes
1
reply
1.4k
views
hgu133a : probe ids to gene symbols
probe probe
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 1.1k
0
votes
1
reply
965
views
Xlaevis probe sequence file for gcRMA not found.
xenopuslaevis probe gcrma xenopuslaevis probe gcrma
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 20
0
votes
0
replies
872
views
Help on Cosmo back ground model
probe cosmo probe cosmo
15.7 years ago Prashantha Hebbar ▴ 260
0
votes
0
replies
922
views
Help on Cosmo
probe cosmo probe cosmo
15.7 years ago Prashantha Hebbar Kiradi [MU-MLSC] ▴ 90
0
votes
4
replies
1.5k
views
makePDpackage
probe annotate probe annotate
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 380
0
votes
2
replies
1.6k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Annotation Normalization Preprocessing cdf probe affy affyPLM oligo Microarray
updated 15.7 years ago by ★ 1.2k • written 15.7 years ago by ★ 4.3k
0
votes
1
reply
1.8k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 70
0
votes
7
replies
1.8k
views
DNA micro-array normalization
Microarray probe Microarray probe
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 240
0
votes
0
replies
925
views
Rcode for removing probes
Normalization cdf probe affy Normalization cdf probe affy
15.7 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
1.0k
views
FW: Problem in masking individual probes to calculate expression values
cdf probe gcrma cdf probe gcrma
updated 15.8 years ago by ▴ 50 • written 15.8 years ago by ★ 2.0k
0
votes
0
replies
843
views
'ArrayExpress' creates invalid AffyBatch objects
probe probe
15.8 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
756
views
regarding GCRMA normalization
cdf probe cdf probe
15.8 years ago James W. MacDonald 68k
0
votes
0
replies
784
views
Regardin GCRMA normalization
cdf probe cdf probe
15.8 years ago James W. MacDonald 68k
0
votes
0
replies
682
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
Annotation probe GOstats Category Annotation probe GOstats Category
15.8 years ago Marc Carlson ★ 7.2k
0
votes
0
replies
852
views
Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO Cancer ChipName probe genefilter PROcess Annotation GO Cancer ChipName
15.8 years ago Suyog Pol ▴ 40
0
votes
2
replies
1.0k
views
Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO ChipName probe genefilter Annotation GO ChipName probe genefilter
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 40
0
votes
1
reply
1.5k
views
Question regarding Installation of annotation package which was built using SQLforge
Annotation GO ChipName probe PROcess Annotation GO ChipName probe PROcess
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ▴ 40
0
votes
1
reply
951
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 15.8 years ago by ★ 2.0k • written 15.8 years ago by ★ 2.0k
0
votes
3
replies
1.7k
views
WARNING: difference in sorting order depending on computer platform?!?
GO probe GO probe
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ★ 2.0k
0
votes
4
replies
1.4k
views
regarding GCRMA normalization
cdf probe cdf probe
15.8 years ago sneha patil ▴ 220
0
votes
0
replies
1.1k
views
Regardin GCRMA normalization
cdf probe cdf probe
15.8 years ago sneha patil ▴ 220
0
votes
1
reply
910
views
FW: Problem in masking individual probes to calculate expression values
probe gcrma probe gcrma
updated 15.8 years ago by ★ 2.0k • written 15.8 years ago by ▴ 50
0
votes
1
reply
1.3k
views
generate a CDF file from Affymetrix ST array 1.1 library
cdf probe PROcess cdf probe PROcess
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 160
0
votes
4
replies
2.0k
views
question about RMA normalized gene expression values
Normalization probe Normalization probe
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 820
0
votes
2
replies
1.0k
views
problem with lumiRatAll.db
Annotation Cancer probe annotate lumi Annotation Cancer probe annotate lumi
updated 15.8 years ago by ▴ 300 • written 15.8 years ago by ▴ 20
0
votes
4
replies
1.8k
views
Positive correlation between dye-swap technical replicates
Normalization Clustering probe limma GLAD Normalization Clustering probe limma GLAD
15.8 years ago Michał Góralski ▴ 40
1,388 results • Page 11 of 28
Recent ...
Replies
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Kevin Blighe ★ 4.0k
Hello Matthew, Thanks for the detailed description-this sounds like a classic challenge in sncRNA analysis, where piRNAs (and other tsRN…
Answer: VariantAnnotation does escape = within header string quotes by Kevin Blighe ★ 4.0k
Hi, Thanks for the minimal reproduction - this is very clear and confirms a bug in `VariantAnnotation::writeVcf()`. The issue is that th…
Answer: Setting up a DESeq2 Design with Paired Data by Kevin Blighe ★ 4.0k
Hello, Your design formula looks mostly correct to me, but I believe that `vessel_n` should be `replicate` (or whatever unique identifie…
Comment: Failure to download resources (MeSHDb) from AnnotationHub by Steve Lianoglou ★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
Locations • All
WEHI, Melbourne, Australia, 12 minutes ago
The Cave, 181 Longwood Avenue, Boston, USA, 43 minutes ago
United States, 2 hours ago
United States, 3 hours ago
United States, 3 hours ago
Traffic: 873 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6