Showing : probe • reset
0
votes
0
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764
views
removing probes from affybatch error
cdf probe cdf probe
15.8 years ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
1.1k
views
affylmGUI MA-plot using Gene Symbols
Microarray Annotation hgu133plus2 probe affy affylmGUI Microarray Annotation hgu133plus2
15.8 years ago Chuming Chen ▴ 140
0
votes
3
replies
1.1k
views
Limma with contrasts
Microarray Normalization probe affy limma Microarray Normalization probe affy limma
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 60
0
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0
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1.1k
views
Limma with contrasts
Microarray Normalization probe affy limma Microarray Normalization probe affy limma
15.8 years ago Matthew Willmann ▴ 60
0
votes
0
replies
692
views
How to do RMA without summary to probeset level?
Normalization probe Normalization probe
15.8 years ago Benilton Carvalho ★ 4.3k
0
votes
1
reply
1.6k
views
Changes in siggenes?
Prostate hgu133a2 probe affy siggenes ASSIGN Prostate hgu133a2 probe affy siggenes
updated 15.8 years ago by ▴ 900 • written 15.8 years ago by ▴ 10
0
votes
0
replies
943
views
need output to contain probe x, y coordinates on array - AffyTiling
Microarray probe PROcess genomes Microarray probe PROcess genomes
15.9 years ago Charles Danko ▴ 40
0
votes
0
replies
964
views
need output to contain probe x, y coordinates on array - AffyTiling
probe PROcess genomes probe PROcess genomes
15.9 years ago Ann Loraine ▴ 110
0
votes
0
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1.1k
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
15.9 years ago Pedro Lopez-Romero ▴ 120
0
votes
5
replies
2.6k
views
Affymetrix HT HG-U133+ PM Array Plate annotation data
Annotation cdf probe Annotation cdf probe
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 40
0
votes
0
replies
1.3k
views
.qcdef file
cdf probe affyQCReport cdf probe affyQCReport
15.9 years ago Leonor Palmeira ▴ 100
0
votes
2
replies
1.2k
views
missing values in limma/contrasts.fit
Microarray Regression probe limma Microarray Regression probe limma
updated 15.9 years ago by ▴ 70 • written 15.9 years ago by 53k
0
votes
1
reply
1.2k
views
missing values in limma/contrasts.fit
probe limma probe limma
updated 15.9 years ago by ★ 1.1k • written 15.9 years ago by ▴ 70
0
votes
4
replies
2.3k
views
hgu133plus2cdfSYMBOL not found
Cancer hgu133plus2 probe affy Cancer hgu133plus2 probe affy
updated 15.9 years ago by ▴ 630 • written 15.9 years ago by ▴ 60
0
votes
2
replies
1.8k
views
Query related to topGene functionality in RankProd library.
Cancer probe RankProd Cancer probe RankProd
updated 15.9 years ago by ▴ 20 • written 15.9 years ago by ▴ 20
0
votes
0
replies
1.4k
views
Query related to topGene functionality in RankProd library.
probe RankProd probe RankProd
15.9 years ago Rohan M ▴ 20
0
votes
2
replies
1.6k
views
probe to entrezID mapping with aafLocusLink
GO hgu133plus2 probe annaffy convert GO hgu133plus2 probe annaffy convert
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 10
0
votes
0
replies
1.6k
views
on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
15.9 years ago Massimo Pinto ▴ 390
0
votes
0
replies
1.4k
views
control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Annotation Mus musculus probe affy Annotation Mus musculus probe affy
15.9 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
942
views
Convert u133a probe Ids to exon array Ids
probe affy probe affy
updated 15.9 years ago by ★ 3.9k • written 15.9 years ago by ★ 1.3k
0
votes
1
reply
837
views
how to compare 3 different array platforms by matchprobes?
Sequencing probe matchprobes Sequencing probe matchprobes
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 10
0
votes
1
reply
827
views
Question on affybatch
probe affy probe affy
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Modifying annotation in Human Gene ST eset object
Annotation probe Annotation probe
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 840
0
votes
1
reply
1.3k
views
Agi4x44PreProcess - Replicated genes
Annotation GUI probe Agi4x44PreProcess Annotation GUI probe Agi4x44PreProcess
updated 16.0 years ago by ★ 1.3k • written 16.0 years ago by ▴ 460
0
votes
1
reply
1.5k
views
question about ontoCompare() performance change
Annotation GO probe Annotation GO probe
updated 16.0 years ago by ▴ 50 • written 16.0 years ago by ★ 7.4k
0
votes
1
reply
1.6k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 16.0 years ago by ▴ 430 • written 16.0 years ago by ▴ 410
0
votes
8
replies
2.0k
views
Help with HyperGTest
Annotation probe GOstats Annotation probe GOstats
16.0 years ago Yue, Chen - BMD ▴ 60
0
votes
0
replies
1.0k
views
Training course at EBI, Cambridge, UK, Feb 1-5
Sequencing Microarray Annotation Normalization Preprocessing probe Sequencing Microarray
16.0 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
1.8k
views
FW: function error for "hyperGTest" in Category package
Annotation GO hgu133a probe GOstats Category Annotation GO hgu133a probe GOstats
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 60
0
votes
2
replies
1.9k
views
function error for "hyperGTest" in Category package
Annotation probe Category Annotation probe Category
updated 16.0 years ago by 6.7k • written 16.0 years ago by ▴ 60
0
votes
0
replies
836
views
Agi4x44PreProcess probe summarization bug?
probe probe
16.1 years ago Tobias Straub ▴ 430
0
votes
0
replies
2.2k
views
qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
16.1 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
3
replies
1.4k
views
how does an annotation package handle ambigious probe set id mappings
Annotation u133x3p probe Annotation u133x3p probe
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 350
0
votes
1
reply
930
views
GSEA
GO probe GO probe
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 10
0
votes
0
replies
972
views
Bioconductor Digest, Vol 80, Issue 15
probe probe
16.1 years ago Lavinia Gordon ▴ 480
0
votes
0
replies
748
views
pre-processing gene expression data from multiple Affymetrix chip types in one batch
cdf probe cdf probe
16.1 years ago Diana Hubbard ▴ 10
0
votes
1
reply
1.1k
views
KEGG2heatmap - blank rows
probe annotate probe annotate
updated 16.1 years ago by ▴ 400 • written 16.1 years ago by ▴ 480
0
votes
0
replies
1.1k
views
Differential expression on individual Affy probes (Peter Saffrey)
probe affy probe affy
16.1 years ago L L ▴ 30
0
votes
2
replies
1.0k
views
Does hist (affy) function work on probe-pair values or probe-set values?
Preprocessing probe graph Preprocessing probe graph
updated 16.1 years ago by ★ 2.0k • written 16.1 years ago by ▴ 840
0
votes
1
reply
800
views
Differential expression on individual Affy probes
probe affy probe affy
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 70
0
votes
1
reply
1.2k
views
Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 10
0
votes
0
replies
794
views
Determining which comparisons show significant difference Multi-class SAM
probe probe
16.1 years ago elliot harrison ▴ 230
0
votes
0
replies
821
views
I share annotation libraries for the Gene Titan plates
Annotation cdf probe Annotation cdf probe
16.1 years ago Groot, Philip de ▴ 630
0
votes
0
replies
979
views
Calculating probe affinities directly from sequence data - GCRMA
probe probe
16.1 years ago Steve Pederson ▴ 170
0
votes
1
reply
1.1k
views
How to modify PM/MM intensity values
probe probe
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 840
0
votes
7
replies
2.7k
views
analyzing HumanHT12 with lumi
Microarray Normalization probe lumi Microarray Normalization probe lumi
updated 16.2 years ago by ▴ 50 • written 16.2 years ago by ▴ 30
0
votes
3
replies
1.6k
views
affy exon array analysis questions
Normalization probe affy Normalization probe affy
updated 16.2 years ago by ★ 3.9k • written 16.2 years ago by ▴ 260
0
votes
1
reply
1.7k
views
Creating LumiBatch object from ExpressionSet
Microarray probe genefilter lumi Microarray probe genefilter lumi
updated 16.2 years ago by ▴ 260 • written 16.2 years ago by ★ 1.2k
0
votes
0
replies
1.6k
views
[Fwd: problem : Detection-p.value column in Illumina HumanHT12 data]
Microarray probe genefilter limma lumi Microarray probe genefilter limma lumi
16.2 years ago Md.Mamunur Rashid ▴ 260
0
votes
1
reply
786
views
data inconsistence in Bionconductor
probe probe
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 10
1,388 results • Page 12 of 28
Recent ...
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
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Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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