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reactome.db
•
reset
3
votes
4
replies
2.3k
views
Download of package ‘reactome.db’ failed (Ubuntu, not for Windows)
reactome.db
ReactomePA
3.2 years ago
florianjt
• 0
5
votes
6
replies
2.5k
views
Download errors during Bioconductor 3.12 update
reactome.db
Bioconductor
BiocManager
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
Michael Steinbaugh
▴ 90
0
votes
5
replies
1.9k
views
ReactomePA / Reactome: Crash when plotting
reactomepa
reactomepa reactome bioconductor viewpathway
reactome.db
reactome
5.9 years ago
martin.busch
• 0
3
votes
4
replies
1.9k
views
Enrichment Analysis for Shot-gun proteomics data using the ReactomePA package: problem with identities loss
reactomepa
reactome.db
reactome
proteomics
uniprot accessions
updated 6.5 years ago by
willem.ligtenberg
▴ 150 • written 6.5 years ago by
Miguel.Cosenza
▴ 10
0
votes
1
reply
1.1k
views
Retrieve the reactome ID of a protein
reactome.db
updated 6.8 years ago by
alserg
▴ 260 • written 6.8 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
5
replies
2.6k
views
reactome.db installation problem
reactome.db
bioclite
7.0 years ago
Jan-Jaap
• 0
6
votes
15
replies
2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 7.0 years ago by
willem.ligtenberg
▴ 150 • written 7.0 years ago by
alserg
▴ 260
3
votes
7
replies
2.1k
views
Misleading information in reactome.db
reactome.db
7.2 years ago
Lluís Revilla Sancho
▴ 730
1
vote
1
reply
1.3k
views
Unable to see reactome.db dbschema
reactome.db
rsqlite
updated 7.3 years ago by
willem.ligtenberg
▴ 150 • written 7.3 years ago by
Lluís Revilla Sancho
▴ 730
3
votes
5
replies
1.7k
views
Selecting few ids from reactome.db
annotationdbi
reactome.db
bug
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
6
replies
1.5k
views
Is reactome.db still updated?
reactome.db
annotation
pathways
7.5 years ago
Guido Hooiveld
★ 3.9k
5
votes
6
replies
2.5k
views
Reactome pathway names from IDs?
biomart
reactome
reactome.db
id
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
enricoferrero
▴ 660
0
votes
1
reply
1.3k
views
Reactome's bug of feature?
reactome.db
updated 8.7 years ago by
willem.ligtenberg
▴ 150 • written 8.7 years ago by
petyuk
▴ 70
8
votes
14
replies
3.8k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 9.1 years ago by
willem.ligtenberg
▴ 150 • written 9.5 years ago by
Guangchuang Yu
★ 1.2k
14 results • Page
1 of 1
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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