Showing : regression • reset
0
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10
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2.4k
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assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.1 years ago Julie Zhu ★ 4.3k
11
votes
3
replies
1.7k
views
Fit a multinomial to RNA-seq count data
voom limma glm multinomial regression
updated 7.8 years ago by ★ 3.3k • written 7.8 years ago by ▴ 110
0
votes
7
replies
1.4k
views
M vs A plot
Microarray Normalization Regression Cancer marray Microarray Normalization Regression
updated 20.2 years ago by ★ 6.0k • written 20.2 years ago by ★ 2.0k
0
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7
replies
1.7k
views
affy code archeology: expresso behavior for liwong/invariantset
Regression gcrma Regression gcrma
updated 11.2 years ago by 65k • written 11.3 years ago by ★ 13k
2
votes
5
replies
15k
views
Limma design and contrast matrix question.
Microarray Regression limma Microarray Regression limma
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 350
1
vote
3
replies
2.1k
views
limma report logFC confidence interval?
Regression limma Regression limma
updated 2.9 years ago by 50k • written 13.3 years ago by ▴ 40
0
votes
2
replies
1.0k
views
Drosophila GeneChip analysis
Regression Regression
updated 20.0 years ago by ▴ 620 • written 20.0 years ago by ▴ 30
0
votes
5
replies
1.2k
views
IRanges causes bug in complete.cases
Regression IRanges Regression IRanges
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ★ 6.5k
0
votes
5
replies
1.3k
views
limma question: direct two-color design & modeling individual subject effects
SystemsBiology Regression probe limma SystemsBiology Regression probe limma
updated 17.0 years ago by ★ 1.1k • written 17.0 years ago by 50k
0
votes
2
replies
3.5k
views
multtest and Cox regression
Regression multtest Regression multtest
updated 19.0 years ago by ▴ 10 • written 19.0 years ago by ▴ 140
0
votes
5
replies
3.0k
views
Finding genes with significant linear regression or trend
Microarray Regression Cancer limma DOSE Microarray Regression Cancer limma DOSE
updated 15.9 years ago by ▴ 340 • written 15.9 years ago by ★ 1.9k
0
votes
4
replies
2.1k
views
How to create nested data frames
Regression Regression
16.5 years ago Ana Conesa ▴ 130
2
votes
23
replies
3.5k
views
Coping with a label/class imbalance in DESeq2
deseq2 rnaseq r regression
updated 7.6 years ago by 41k • written 7.6 years ago by • 0
0
votes
3
replies
1.4k
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 13.3 years ago by ▴ 250 • written 13.3 years ago by ★ 3.9k
1
vote
2
replies
3.4k
views
Kernel Ridge Regression in R for Drug-Target Interaction
regression kernel ridge r
updated 7.6 years ago by • 0 • written 8.0 years ago by • 0
0
votes
2
replies
215
views
WGCNA: analysis of complex trait associations with regressions
Regression WGCNA
29 days ago • updated 24 days ago w.cookson • 0
0
votes
1
reply
1.5k
views
Choosing the kernel for SVM (regression) using rminer package
Regression Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
votes
1
reply
1.1k
views
question about limma fit differences?
Regression limma Regression limma
updated 20.2 years ago by 50k • written 20.2 years ago by ▴ 20
0
votes
2
replies
2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 9.9 years ago by ▴ 570 • written 9.9 years ago by 16k
0
votes
4
replies
2.5k
views
DESeq2 high fold change values for comparison of samples with zero counts
Regression DESeq DESeq2 Regression DESeq DESeq2
updated 10.2 years ago by 41k • written 10.2 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
votes
1
reply
1.5k
views
Support vector regression
Classification Regression Classification Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
votes
1
reply
996
views
GWASTools: quasi-/perfect linear separation
Regression
updated 9.6 years ago by ▴ 870 • written 9.6 years ago by ★ 13k
0
votes
1
reply
1.6k
views
[MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `
Coverage Regression edgeR MEDIPS Coverage Regression edgeR MEDIPS
updated 10.3 years ago by ▴ 240 • written 10.3 years ago by ▴ 10
0
votes
1
reply
704
views
mean versus linear model?
Regression limma Regression limma
updated 20.3 years ago by ★ 6.0k • written 20.3 years ago by ▴ 340
0
votes
3
replies
8.9k
views
ggplot2 error
Regression Regression
10.2 years ago Alyaa Mahmoud ▴ 440
0
votes
2
replies
4.2k
views
edgeR choose the best model of GLM
Regression edgeR Regression edgeR
updated 11.2 years ago by 50k • written 11.2 years ago by ▴ 40
0
votes
1
reply
2.1k
views
Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 19.3 years ago by ▴ 360 • written 19.3 years ago by ▴ 620
0
votes
3
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 11.8 years ago by 25k • written 11.8 years ago by 50k
0
votes
3
replies
3.6k
views
lower.limits and upper.limits in glmnet
Regression Regression
updated 10.5 years ago by ▴ 60 • written 10.5 years ago by ▴ 370
8
votes
3
replies
6.9k
views
Removing batch effects with sva and combat using the sva package
Regression limma sva Regression limma sva
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 650
0
votes
1
reply
1.8k
views
maSigPro and "subscript out of bounds"
Normalization Regression maSigPro Normalization Regression maSigPro
updated 12.9 years ago by ▴ 240 • written 12.9 years ago by ★ 6.8k
1
vote
1
reply
7.1k
views
[LIMMA]lmFit with continuous predictor
Regression limma Regression limma
updated 11.8 years ago by ▴ 130 • written 11.8 years ago by ▴ 210
2
votes
2
replies
2.3k
views
[limma] [Rfit] [samr] Gene expression distribution using lmFit and eBayes
Microarray Regression Microarray Regression
updated 10.4 years ago by 50k • written 10.4 years ago by ▴ 30
0
votes
1
reply
1.6k
views
paired microarray samples
Regression limma beadarray Regression limma beadarray
updated 14.5 years ago by ★ 6.0k • written 14.5 years ago by ▴ 60
0
votes
1
reply
984
views
predict an ordinal response variable from high-throughput gene expression data
Microarray Regression Microarray Regression
updated 14.5 years ago by ▴ 30 • written 14.5 years ago by ★ 1.0k
0
votes
2
replies
901
views
Filter before? Filter after? With maanova
Regression probe maanova Regression probe maanova
updated 14.8 years ago by ★ 5.5k • written 14.8 years ago by ★ 1.0k
0
votes
1
reply
1.1k
views
Huber et al: Variance stabilization ...
Microarray Regression Microarray Regression
updated 21.2 years ago by ★ 13k • written 21.2 years ago by ▴ 60
0
votes
7
replies
1.3k
views
IRanges: interaction with model fitting
Regression IRanges Regression IRanges
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 6.5k
0
votes
2
replies
1.9k
views
how to create an affybatch
Normalization Regression hgu133a probe Normalization Regression hgu133a probe
14.8 years ago Venkat Sundar ▴ 30
0
votes
2
replies
815
views
Newbe question
Regression Regression
12.8 years ago SimonNoël ▴ 450
0
votes
6
replies
1.4k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 12.6 years ago by 6.7k • written 12.6 years ago by ★ 4.2k
0
votes
2
replies
890
views
missing values in limma/contrasts.fit
Microarray Regression probe limma Microarray Regression probe limma
updated 14.4 years ago by ▴ 70 • written 14.4 years ago by 50k
0
votes
1
reply
997
views
[R] lowess regression
Regression Regression
updated 11.6 years ago by ▴ 10 • written 11.6 years ago by ▴ 670
0
votes
2
replies
1.1k
views
Maanova & createdata
Regression maanova Regression maanova
updated 15.5 years ago by ▴ 450 • written 15.5 years ago by ★ 1.0k
0
votes
1
reply
966
views
batch effects and VSN
Normalization Regression vsn limma oligo Normalization Regression vsn limma oligo
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 330
0
votes
1
reply
2.3k
views
forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 15.4 years ago by ★ 2.3k • written 15.4 years ago by ▴ 130
0
votes
1
reply
733
views
Binary regression trees
Regression Regression
updated 19.0 years ago by ▴ 210 • written 19.0 years ago by ▴ 10
0
votes
2
replies
1.8k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing Regression MEDIPS Preprocessing Regression MEDIPS
updated 10.3 years ago by ▴ 570 • written 10.3 years ago by ▴ 20
0
votes
2
replies
941
views
Does old workspace work?
Regression probe gcrma PROcess maanova Regression probe gcrma PROcess maanova
updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ★ 1.0k
50 results • Page 1 of 1
Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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