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repitools
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How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
7.6 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.8k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
8.5 years ago
divyswar01
• 0
0
votes
0
replies
1.2k
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
9.4 years ago
pm2015
• 0
0
votes
0
replies
1.1k
views
SssI free analysis in BayMeth/Repitools
repitools
10.2 years ago
Matthias Lienhard
▴ 280
0
votes
0
replies
1.2k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
11.6 years ago
Dario Strbenac
★ 1.6k
0
votes
0
replies
1.6k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
11.7 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.6k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 11.9 years ago by
Dario Strbenac
★ 1.6k • written 11.9 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.3k
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
12.6 years ago
Guest User
★ 13k
0
votes
21
replies
8.2k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 23 months ago by
Marge
• 0 • written 12.8 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
2.1k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 14.0 years ago by
Chao-Jen Wong
▴ 580 • written 14.0 years ago by
Guest User
★ 13k
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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