Showing : repitools • reset
0
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3
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2.8k
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How to handle multi-TSS genes in Repitools?
repitools promoter tss annotation
7.8 years ago Ryan C. Thompson ★ 7.9k
1
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2
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1.8k
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cpgDensityCalc function in Repitools giving contradictory tools
repitools bioconductor cpgDensityCalc
8.8 years ago divyswar01 • 0
0
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0
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1.2k
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Analysis of MBD-seq data without ssl control using BayMeth
Baymeth methylation MBD-seq Repitools
9.6 years ago pm2015 • 0
0
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0
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1.2k
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SssI free analysis in BayMeth/Repitools
repitools
10.5 years ago Matthias Lienhard ▴ 280
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1.3k
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Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
11.9 years ago Dario Strbenac ★ 1.6k
0
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1.6k
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Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
11.9 years ago Jaritz,Markus ▴ 20
0
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5
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2.7k
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Graph of methylation data around TSS - Repitools or other package?
GO Repitools GO Repitools
updated 12.2 years ago by ★ 1.6k • written 12.2 years ago by ★ 1.1k
0
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0
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1.3k
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Analysing grouped datasets in repitools
limma Repitools limma Repitools
12.9 years ago Guest User ★ 13k
0
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21
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8.5k
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BAM files to Genomic Ranges object
Alignment convert Repitools Alignment convert Repitools
updated 2.1 years ago by • 0 • written 13.0 years ago by ▴ 280
0
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3
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2.2k
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Repitools/ClusterPlots
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
updated 14.2 years ago by ▴ 580 • written 14.2 years ago by ★ 13k
10 results • Page 1 of 1
Recent ...
Replies
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Awards • All
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Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Commentator to James W. MacDonald 68k
Great Question to fl ▴ 20
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