Bioconductor Repitools

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repitools promoter tss annotation

6.7 years ago Ryan C. Thompson ★ 7.9k

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repitools bioconductor cpgDensityCalc

7.6 years ago divyswar01 • 0

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Baymeth methylation MBD-seq Repitools

8.5 years ago pm2015 • 0

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repitools

9.3 years ago Matthias Lienhard ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.7 years ago Dario Strbenac ★ 1.5k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.8 years ago Jaritz,Markus ▴ 20

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GO Repitools GO Repitools

updated 11.0 years ago by Dario Strbenac ★ 1.5k • written 11.0 years ago by Tim Smith ★ 1.1k

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limma Repitools limma Repitools

11.8 years ago Guest User ★ 13k

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Alignment convert Repitools Alignment convert Repitools

updated 12 months ago by Marge • 0 • written 11.9 years ago by José Luis Lavín ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 13.1 years ago by Chao-Jen Wong ▴ 580 • written 13.1 years ago by Guest User ★ 13k

10 results • Page 1 of 1

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Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

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Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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