Bioconductor Rhtslib

Showing : rhtslib • reset

votes

replies

855

views

Rhts Rhtslib

4.6 years ago anand_mt ▴ 90

votes

replies

9.9k

views

Rhtslib installation error zlib

updated 6.1 years ago by leoadam014 • 0 • written 7.0 years ago by boboshaq • 0

vote

replies

2.9k

views

software error Rhtslib zlib.h

updated 6.1 years ago by Hervé Pagès 16k • written 6.1 years ago by juandenciso14 • 0

votes

replies

2.9k

views

biocLite package installation withr biocinstaller rhtslib

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by merv ▴ 150

votes

replies

2.7k

views

Rhtslib

updated 7.4 years ago by Hervé Pagès 16k • written 7.4 years ago by Aaron Lun ★ 29k

votes

replies

1.8k

views

diffhic csaw Rhtslib

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by favorov • 0

votes

replies

2.7k

views

Rhtslib htslib package

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by Shian Su ▴ 40

7 results • Page 1 of 1

Recent ...

Replies

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Votes

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

Awards • All

Popular Question to Ou, Jianhong ★ 1.3k