Bioconductor Rhtslib

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729

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Rhts Rhtslib

3.7 years ago anand_mt ▴ 90

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8.9k

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Rhtslib installation error zlib

updated 5.2 years ago by leoadam014 • 0 • written 6.2 years ago by boboshaq • 0

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2.3k

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software error Rhtslib zlib.h

updated 5.3 years ago by Hervé Pagès 16k • written 5.3 years ago by juandenciso14 • 0

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2.5k

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biocLite package installation withr biocinstaller rhtslib

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by merv ▴ 140

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2.2k

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Rhtslib

updated 6.6 years ago by Hervé Pagès 16k • written 6.6 years ago by Aaron Lun ★ 28k

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1.5k

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diffhic csaw Rhtslib

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by favorov • 0

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2.2k

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Rhtslib htslib package

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by Shian Su ▴ 40

7 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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