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rhtslib
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Error with Rhtslib
Rhts
Rhtslib
4.6 years ago
anand_mt
▴ 90
0
votes
6
replies
9.9k
views
Rhtslib - install error
Rhtslib
installation
error
zlib
updated 6.1 years ago by
leoadam014
• 0 • written 7.0 years ago by
boboshaq
• 0
1
vote
6
replies
2.9k
views
Error on Rhtslib package installation
software error
Rhtslib
zlib.h
updated 6.1 years ago by
Hervé Pagès
16k • written 6.1 years ago by
juandenciso14
• 0
5
votes
5
replies
2.9k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite
package installation
withr
biocinstaller
rhtslib
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
merv
▴ 150
3
votes
3
replies
2.7k
views
Rhtslib fails to find liblzma.dylib on Mac OSX
Rhtslib
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
Aaron Lun
★ 29k
0
votes
3
replies
1.8k
views
csaw intallation issue: cannot find "lib" in Rhtslib installation
diffhic
csaw
Rhtslib
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
favorov
• 0
4
votes
7
replies
2.7k
views
Does Rhtslib currently work on Windows?
Rhtslib
htslib
package
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
Shian Su
▴ 40
7 results • Page
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Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Votes
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
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