Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rnaseqdtu
•
reset
16
votes
25
replies
3.0k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
written 5.1 years ago by
fiona.dick91
▴ 60
0
votes
11
replies
1.6k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
5.1 years ago
saddamhusain77
• 0
3
votes
9
replies
2.1k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
rbenel
▴ 40
2
votes
8
replies
1.2k
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
5.3 years ago
rbenel
▴ 40
2
votes
7
replies
1.2k
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
2.7 years ago
rbenel
▴ 40
1
vote
5
replies
1.3k
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
2.1 years ago • updated 23 months ago
ksong
▴ 10
1
vote
5
replies
1.5k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 5.5 years ago by
Michael Love
41k • written 5.6 years ago by
rbenel
▴ 40
0
votes
5
replies
1.2k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
2.7 years ago
bioinformatic_trainee
▴ 10
2
votes
4
replies
1.6k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
5.3 years ago
d-joester
▴ 20
1
vote
3
replies
1.2k
views
Visualization for DE transcripts
rnaseqdtu
4.8 years ago
rbenel
▴ 40
0
votes
3
replies
1.0k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
Jack.Hearn
• 0
2
votes
2
replies
836
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 4.7 years ago by
Michael Love
41k • written 4.7 years ago by
nicog
• 0
0
votes
2
replies
704
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 3.9 years ago by
Michael Love
41k • written 3.9 years ago by
dixit.anirudha
• 0
2
votes
2
replies
1.1k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
fiona.dick91
▴ 60
2
votes
2
replies
686
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
22 months ago
wangziwei0010
▴ 10
0
votes
1
reply
706
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
debatosh das
▴ 10
0
votes
1
reply
613
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
rohitsatyam102
▴ 20
1
vote
1
reply
1.4k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.0 years ago by
Michael Love
41k • written 5.3 years ago by
fiona.dick91
▴ 60
18 results • Page
1 of 1
Recent ...
Replies
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Awards
• All
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.8k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Locations
• All
United Kingdom,
just now
United Kingdom,
6 minutes ago
United States,
9 minutes ago
United States,
10 minutes ago
United Kingdom,
13 minutes ago
Traffic: 869 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6