Bioconductor Rsqlite

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RSQLite org.Hs.eg.db

4.2 years ago chenghaomai • 0

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3.3k

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RSQLite lumi

5.0 years ago Rohmatul • 0

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1.2k

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jaspar rsqlite

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by m.d.shapiro • 0

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3.7k

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R RSQLite

updated 8.3 years ago by James W. MacDonald 68k • written 8.3 years ago by biostR ▴ 10

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1.8k

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reactome.db rsqlite

updated 8.8 years ago by willem.ligtenberg ▴ 150 • written 8.8 years ago by Lluís Revilla Sancho ▴ 760

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1.4k

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rsqlite

8.8 years ago ngrundmann • 0

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5.3k

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rsqlite bioconductor bioclite rcpp.h

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by conkline • 0

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1.5k

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oligo rsqlite pd.hta.2.0

updated 9.1 years ago by James W. MacDonald 68k • written 9.1 years ago by Vincent J. Carey, Jr. 6.7k

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1.8k

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org.hs.eg.db DBI rsqlite

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by Gordon Smyth 53k

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2.4k

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annotation annotationdbi rsqlite

10.6 years ago Ceca Bojic ▴ 10

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3.6k

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biocinstaller genomicfeatures rsqlite

updated 10.9 years ago by Dan Tenenbaum ★ 8.2k • written 10.9 years ago by vimartin • 0

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2.7k

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VariantAnnotation RSQLite

10.9 years ago remi.tournebize ▴ 10

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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