Bioconductor Rsqlite

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RSQLite org.Hs.eg.db

4.3 years ago chenghaomai • 0

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RSQLite lumi

5.1 years ago Rohmatul • 0

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jaspar rsqlite

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by m.d.shapiro • 0

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R RSQLite

updated 8.4 years ago by James W. MacDonald 68k • written 8.4 years ago by biostR ▴ 10

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reactome.db rsqlite

updated 8.9 years ago by willem.ligtenberg ▴ 150 • written 8.9 years ago by Lluís Revilla Sancho ▴ 760

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rsqlite

8.9 years ago ngrundmann • 0

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rsqlite bioconductor bioclite rcpp.h

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by conkline • 0

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oligo rsqlite pd.hta.2.0

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by Vincent J. Carey, Jr. 6.7k

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org.hs.eg.db DBI rsqlite

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by Gordon Smyth 53k

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annotation annotationdbi rsqlite

10.7 years ago Ceca Bojic ▴ 10

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biocinstaller genomicfeatures rsqlite

updated 11.1 years ago by Dan Tenenbaum ★ 8.2k • written 11.1 years ago by vimartin • 0

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VariantAnnotation RSQLite

11.1 years ago remi.tournebize ▴ 10

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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