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scRNAseq
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0
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37
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq
scRNAseq
2 days ago
Bibi
• 0
0
votes
1
reply
156
views
Can you find the correct transcript in scRNA seq data
scRNAseq
RNAseq
updated 5 weeks ago by
ATpoint
★ 4.1k • written 6 weeks ago by
Merav
• 0
0
votes
2
replies
257
views
Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
9 weeks ago • updated 8 weeks ago
rocanja
▴ 60
0
votes
1
reply
268
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 12 weeks ago by
ATpoint
★ 4.1k • written 12 weeks ago by
sodiogoes
• 0
1
vote
2
replies
920
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
5 months ago
ruba-mahmoud
• 0
0
votes
2
replies
547
views
scRNA analysis : DEG between low and high-expressing cells
scRNAseq
7 months ago
Momo
• 0
0
votes
1
reply
401
views
FALSE error when checking a pre made sample data
Rstudio
scRNAseq
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
DrFizz
• 0
1
vote
5
replies
889
views
Recommendation for large.n in filterByExpr
scRNAseq
edgeR
SingleCellExperiment
9 months ago
duez.tolga
• 0
0
votes
1
reply
1.1k
views
DESeq2 error after installing BiocManager
scRNAseq
RStudio
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
DrFizz
• 0
4
votes
3
replies
1.1k
views
Custom design for scRNA DGE with pseudobulking
scRNAseq
scrna
paireddesign
edgeR
pseudobulking
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
garcia
• 0
0
votes
1
reply
428
views
If highly-expressed genes are upregulated, what happens to genes with lower expression after normalization?
scRNA
scRNAseq
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
Omer
• 0
0
votes
1
reply
586
views
library(topGO) query
topGO
scRNAseq
updated 10 months ago by
Basti
▴ 780 • written 10 months ago by
Francesco
• 0
0
votes
0
replies
370
views
adding noise to scRNA Seq counts
scRNAseq
10 months ago
Jiyuan
• 0
1
vote
11
replies
3.7k
views
Error: Bioconductor version cannot be validated; no internet connection?
scRNAseq
updated 6 months ago by
Manuel
• 0 • written 10 months ago by
Elham
• 0
2
votes
3
replies
1.3k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
11 months ago
Lluís Revilla Sancho
▴ 730
0
votes
2
replies
702
views
Could not find function "Standard Chromosomes"
scrna
scRNAseq
updated 7 months ago by
Gabriella
• 0 • written 14 months ago by
sarah.jobbins
• 0
0
votes
2
replies
962
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell
RNASeq
RNASeqData
scRNAseq
updated 4 weeks ago by
wichaidi
• 0 • written 18 months ago by
irvin.ng
• 0
17 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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