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5
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2
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5.4k
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org.Hs.eg.db - convert ALIAS to ENTREZID, GENENAME
org.hs.eg.db
select
8.6 years ago
Brian Smith
▴ 120
1
vote
2
replies
11k
views
select() gene in db not working although key exists
annotationdbi
org.mm.eg.db
org.dm.eg.db
select
9.0 years ago
Patrick Schorderet
▴ 20
4
votes
2
replies
3.4k
views
select keys from org.Mm.eg.db
org.mm.eg.db
select
list
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
1.2k
views
Select function not working in R; how to correct custom select
Select
Annotation Dbi
Custom
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
ekl
• 0
1
vote
3
replies
1.1k
views
AnnotationDBI Select with incomplete keys tags
annotationdbi
select
8.1 years ago
Rockbar
• 0
8
votes
4
replies
6.6k
views
Error UseMethod ("select_"): from bioconductor dplyr select package
bioconductor
dplyr
select
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
abedini.jaleh
▴ 10
0
votes
1
reply
1.0k
views
What is the name of this probe?
affymetrix microarrays
hta20transcriptcluster
r
select
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
Pindre
• 0
1
vote
3
replies
1.4k
views
Very slow select to extract data from UniProt.ws object
uniprot.ws
select
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
alxcho
▴ 10
0
votes
3
replies
1.5k
views
Select in UniProt.ws not working?
uniprot.ws
select
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
sarah.sandmann
• 0
3
votes
6
replies
1.6k
views
error using org.Hs.eg.db package : Error in get(load(file)) :
org.hs.eg.db
select
9.0 years ago
tina.khajeh
• 0
10 results • Page
1 of 1
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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