Showing : snplocs • reset
0
votes
1
reply
491
views
SNP locus package for mouse?
SNPlocs packFinder
updated 11 months ago by 68k • written 11 months ago by • 0
1
vote
3
replies
1.1k
views
Using injectSNPs with a custom set of SNPs
SNPlocs BSgenome
written 17 months ago by • 0
0
votes
1
reply
736
views
Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
XtraSNPlocs SNPlocs
updated 2.2 years ago by ★ 4.8k • written 2.2 years ago by ▴ 20
1
vote
0
replies
1.1k
views
News: BSgenome package for T2T-CHM13v2.0 assembly and SNPlocs package for dbSNP155
BSgenome dbSNP T2T-CHM13v2.0 SNPlocs
2.9 years ago Hervé Pagès 16k
0
votes
0
replies
867
views
how to construct a SNPlocs-class by myself
BSgenome SNPlocs
4.0 years ago Guandong Shang ▴ 40
0
votes
1
reply
1.3k
views
3.7 behaviour change with snplocs snpsById?
software error snplocs gpos
updated 6.8 years ago by 16k • written 6.9 years ago by • 0
3
votes
4
replies
1.8k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
8.1 years ago Ramiro Magno ▴ 100
0
votes
2
replies
1.9k
views
injectSNPS only for common variants
snp snplocs
updated 8.4 years ago by ★ 3.4k • written 8.4 years ago by • 0
0
votes
1
reply
1.3k
views
SNPlocs package for dbSNP 135
Cancer SNPlocs Cancer SNPlocs
updated 9.6 years ago by • 0 • written 13.1 years ago by 16k
0
votes
6
replies
2.7k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP Cancer SNPlocs SNP Cancer SNPlocs
updated 9.7 years ago by • 0 • written 15.8 years ago by 16k
1
vote
6
replies
2.7k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
10.3 years ago garrisrg ▴ 10
0
votes
2
replies
2.0k
views
using snpid2grange() and/or rsidsToGRanges() for rsid lists with missing
SNPlocs
updated 10.5 years ago by 6.7k • written 10.5 years ago by ▴ 20
0
votes
0
replies
1.7k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
10.9 years ago swarmqq@gmail.com ▴ 10
0
votes
3
replies
2.2k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 11.1 years ago by ▴ 20 • written 11.2 years ago by ★ 4.2k
0
votes
2
replies
1.8k
views
VCF as custom variant annotation database
Annotation SNPlocs Annotation SNPlocs
updated 11.2 years ago by ★ 6.8k • written 11.2 years ago by ▴ 380
0
votes
1
reply
1.7k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS
updated 11.3 years ago by ▴ 280 • written 11.3 years ago by 16k
0
votes
0
replies
2.2k
views
Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO
11.3 years ago Hervé Pagès 16k
0
votes
0
replies
2.3k
views
BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
11.3 years ago Hervé Pagès 16k
0
votes
1
reply
1.2k
views
custom variant AnnotationDbi?
Annotation SNPlocs Annotation SNPlocs
updated 11.5 years ago by 6.7k • written 11.5 years ago by ▴ 380
0
votes
2
replies
4.2k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 11.8 years ago by 16k • written 11.8 years ago by ▴ 970
0
votes
4
replies
2.0k
views
IlluminaHumanMethylation450kprobe for nearest TSS calculation question
Annotation BSgenome SNPlocs BSgenome Annotation BSgenome SNPlocs BSgenome
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ★ 13k
0
votes
3
replies
2.1k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
SNP SNPlocs SNP SNPlocs
updated 12.2 years ago by 16k • written 12.2 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
SNP SNPlocs SNP SNPlocs
12.2 years ago Christina Chaivorapol ▴ 40
0
votes
4
replies
2.4k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 12.5 years ago by 16k • written 12.5 years ago by ▴ 100
0
votes
3
replies
1.6k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 12.5 years ago by 16k • written 12.5 years ago by ▴ 100
0
votes
4
replies
1.9k
views
GGtools: transScores function returning cis eQTL
SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools
updated 12.5 years ago by 6.7k • written 12.5 years ago by ★ 13k
0
votes
0
replies
1.4k
views
dbSNP strand information
SNPlocs safe SNPlocs safe
13.1 years ago Alex Gutteridge ▴ 650
0
votes
3
replies
1.7k
views
Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 13.1 years ago by ★ 6.8k • written 13.1 years ago by ▴ 650
0
votes
4
replies
1.7k
views
Finding coding SNPs with predictCoding
SNP VariantAnnotation BSgenome SNPlocs BSgenome VariantAnnotation SNP VariantAnnotation
updated 13.1 years ago by ★ 6.8k • written 13.1 years ago by ▴ 650
0
votes
3
replies
2.1k
views
RE : maping SNPs
SNP Annotation Cancer SNPlocs TranscriptDb GenomicFeatures GenomicRanges SNP Annotation
updated 13.1 years ago by 16k • written 13.1 years ago by ▴ 450
0
votes
1
reply
1.2k
views
custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 13.3 years ago by 16k • written 13.3 years ago by ▴ 100
0
votes
1
reply
1.6k
views
Does liftOver work for SNPs mapping to different chr between different builds
SNP GO Cancer SNPlocs rtracklayer SNP GO Cancer SNPlocs rtracklayer
updated 13.4 years ago by ★ 11k • written 13.4 years ago by ★ 1.0k
0
votes
6
replies
1.7k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 13.5 years ago by 6.7k • written 13.5 years ago by ★ 4.2k
0
votes
7
replies
2.1k
views
Probe ID to Sequence
SNPlocs GenomicRanges SNPlocs GenomicRanges
updated 13.7 years ago by ★ 4.2k • written 13.7 years ago by ▴ 400
0
votes
2
replies
1.4k
views
seqnames on dbSNP object error
SNPlocs SNPlocs
updated 14.0 years ago by 16k • written 14.0 years ago by ▴ 910
0
votes
2
replies
1.7k
views
RE : RE : maping SNPs
SNP SNPlocs TranscriptDb IRanges GenomicFeatures SNP SNPlocs TranscriptDb IRanges
updated 14.2 years ago by ★ 6.8k • written 14.2 years ago by ▴ 450
0
votes
0
replies
1.8k
views
RE : maping SNPs; first foundation challenge offered
SNP Annotation Cancer SNPlocs TranscriptDb biomaRt GenomicFeatures SNP Annotation Cancer
14.3 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
replies
1.6k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer BSgenome SNPlocs BSgenome Cancer BSgenome SNPlocs BSgenome
14.9 years ago Hervé Pagès 16k
0
votes
3
replies
1.2k
views
Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
SNPlocs SNPlocs
updated 15.2 years ago by ▴ 70 • written 15.2 years ago by 21k
0
votes
1
reply
3.1k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 15.8 years ago by 16k • written 15.8 years ago by ▴ 90
0
votes
3
replies
1.2k
views
other human genomes, other SNP sets?
Sequencing BSgenome SNPlocs BSgenome Sequencing BSgenome SNPlocs BSgenome
16.1 years ago Paul Shannon ★ 1.1k
0
votes
0
replies
1.6k
views
About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
SNP Cancer SNPlocs SNP Cancer SNPlocs
16.1 years ago Hervé Pagès 16k
0
votes
4
replies
2.9k
views
how to modify a Biostrings object
SNPlocs SNPlocs
updated 16.1 years ago by 16k • written 16.1 years ago by ★ 1.1k
43 results • Page 1 of 1
Recent ...
Replies
Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0
Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k
It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
Answer: DESeq2 by ATpoint ★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer, very useful!
Votes
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to Arctic • 0
Popular Question to hrishi27n ▴ 20
Supporter to bhanu.chandra1 • 0
Popular Question to mdeea123 ▴ 10
Locations • All
Australia, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
The city by the bay, 2 hours ago
Germany, 2 hours ago
France, 4 hours ago
Traffic: 618 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6