Showing : snprelate • reset
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
3.0 years ago m610110001 • 0
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2
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1.5k
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How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 3.6 years ago by ▴ 890 • written 3.6 years ago by • 0
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1
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1.8k
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.8 years ago by ▴ 890 • written 3.9 years ago by • 0
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1.4k
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SNPRelate handling of missing genotypes
SNPRelate
3.8 years ago serpalma.v ▴ 60
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1.1k
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#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
4.1 years ago Bhargavi • 0
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1
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1.4k
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error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 4.9 years ago by • 0 • written 4.9 years ago by • 0
3
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1
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1.5k
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How to add colors to the PCA made using SNPRelate
snprelate
updated 5.1 years ago by 68k • written 5.1 years ago by • 0
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1
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1.2k
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What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 6.4 years ago by ▴ 30 • written 6.4 years ago by • 0
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1
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1.3k
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 6.5 years ago by ▴ 30 • written 6.5 years ago by ▴ 60
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1
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2.1k
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VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 6.6 years ago by ▴ 890 • written 6.6 years ago by • 0
1
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1
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1.4k
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PCA axis description SNPRelate
SNPRelate PCA
updated 6.6 years ago by ▴ 890 • written 6.6 years ago by ▴ 60
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1
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4.7k
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 7.1 years ago by ▴ 30 • written 7.1 years ago by • 0
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1
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1.3k
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Using previously calculated PCs in GENESIS
genesis snprelate
7.1 years ago Stephanie M. Gogarten ▴ 890
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1
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1.8k
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Write gds in parallel
gds SNPRelate BiocParallel
updated 7.5 years ago by ▴ 30 • written 7.5 years ago by ▴ 40
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2
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2.1k
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Error converting vcf to gds
snprelate vcf gds
updated 7.6 years ago by ▴ 30 • written 7.6 years ago by • 0
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2
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2.2k
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Cannot read plink files correctly
snprelate Tutorial
updated 8.4 years ago by ▴ 30 • written 8.4 years ago by • 0
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1
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1.9k
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SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 9.4 years ago by ▴ 30 • written 9.4 years ago by • 0
3
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2
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2.2k
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Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 9.5 years ago by ▴ 30 • written 9.5 years ago by ▴ 40
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9
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7.4k
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unable to update mgcv package
mgcv snprelate
updated 9.9 years ago by 25k • written 9.9 years ago by • 0
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4
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3.0k
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NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by ▴ 10
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0
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1.2k
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RADseq chromosomes unknown
snprelate RADseq Stacks
10.0 years ago clive.darwell • 0
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2.2k
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GWASTools
Organism GWASTools Organism GWASTools SNPRelate
12.6 years ago Stephanie M. Gogarten ▴ 890
22 results • Page 1 of 1
Recent ...
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Answer: Integration: Paired-end vs healthy single-end from a different source by wba64023 • 0
Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…
Comment: Could we detect difference at pathway level but not significant different at gen by wba64023 • 0
thanks for sharing! [slope 2][1] [1]: https://slope2.online
Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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