Showing : snprelate • reset
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
2.4 years ago m610110001 • 0
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2
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1.3k
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How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 3.0 years ago by ▴ 890 • written 3.0 years ago by • 0
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1
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1.6k
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.1 years ago by ▴ 890 • written 3.3 years ago by • 0
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1.2k
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SNPRelate handling of missing genotypes
SNPRelate
3.1 years ago serpalma.v ▴ 60
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940
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#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
3.4 years ago Bhargavi • 0
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1
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1.3k
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error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 4.2 years ago by • 0 • written 4.2 years ago by • 0
3
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1
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1.3k
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How to add colors to the PCA made using SNPRelate
snprelate
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
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1
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1.0k
views
What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 5.7 years ago by ▴ 30 • written 5.7 years ago by • 0
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1
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1.1k
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.8 years ago by ▴ 30 • written 5.8 years ago by ▴ 60
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1
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1.9k
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VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by • 0
1
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1
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1.2k
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PCA axis description SNPRelate
SNPRelate PCA
updated 6.0 years ago by ▴ 890 • written 6.0 years ago by ▴ 60
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1
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4.3k
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 6.4 years ago by ▴ 30 • written 6.4 years ago by • 0
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1
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1.1k
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Using previously calculated PCs in GENESIS
genesis snprelate
6.5 years ago Stephanie M. Gogarten ▴ 890
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1
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1.6k
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Write gds in parallel
gds SNPRelate BiocParallel
updated 6.9 years ago by ▴ 30 • written 6.9 years ago by ▴ 40
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2
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1.9k
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Error converting vcf to gds
snprelate vcf gds
updated 7.0 years ago by ▴ 30 • written 7.0 years ago by • 0
1
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2
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2.0k
views
Cannot read plink files correctly
snprelate Tutorial
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by • 0
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1
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1.8k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by • 0
3
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2
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2.0k
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Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 8.8 years ago by ▴ 30 • written 8.8 years ago by ▴ 40
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9
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6.9k
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unable to update mgcv package
mgcv snprelate
updated 9.2 years ago by 25k • written 9.2 years ago by • 0
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4
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2.8k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 9.3 years ago by ▴ 30 • written 9.3 years ago by ▴ 10
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1.1k
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RADseq chromosomes unknown
snprelate RADseq Stacks
9.3 years ago clive.darwell • 0
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2.1k
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GWASTools
Organism GWASTools Organism GWASTools SNPRelate
12.0 years ago Stephanie M. Gogarten ▴ 890
22 results • Page 1 of 1
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Comment: sesameDataCache is not work properly on my system by Samreen • 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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