Showing : snprelate • reset
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
2.2 years ago m610110001 • 0
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2
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1.3k
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How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 2.9 years ago by ▴ 890 • written 2.9 years ago by • 0
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1.5k
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.0 years ago by ▴ 890 • written 3.2 years ago by • 0
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1.1k
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SNPRelate handling of missing genotypes
SNPRelate
3.0 years ago serpalma.v ▴ 60
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901
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#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
3.3 years ago Bhargavi • 0
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1
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1.2k
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error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 4.1 years ago by • 0 • written 4.1 years ago by • 0
3
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1
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1.3k
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How to add colors to the PCA made using SNPRelate
snprelate
updated 4.4 years ago by 67k • written 4.4 years ago by • 0
1
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1
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993
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What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 5.6 years ago by ▴ 30 • written 5.6 years ago by • 0
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1
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1.1k
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.7 years ago by ▴ 30 • written 5.7 years ago by ▴ 60
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1
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1.9k
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VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 5.8 years ago by ▴ 890 • written 5.8 years ago by • 0
1
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1
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1.2k
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PCA axis description SNPRelate
SNPRelate PCA
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by ▴ 60
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1
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4.3k
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 6.3 years ago by ▴ 30 • written 6.3 years ago by • 0
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1
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1.1k
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Using previously calculated PCs in GENESIS
genesis snprelate
6.4 years ago Stephanie M. Gogarten ▴ 890
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1
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1.6k
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Write gds in parallel
gds SNPRelate BiocParallel
updated 6.8 years ago by ▴ 30 • written 6.8 years ago by ▴ 40
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2
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1.9k
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Error converting vcf to gds
snprelate vcf gds
updated 6.8 years ago by ▴ 30 • written 6.9 years ago by • 0
1
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2
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2.0k
views
Cannot read plink files correctly
snprelate Tutorial
updated 7.7 years ago by ▴ 30 • written 7.7 years ago by • 0
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1
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1.7k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by • 0
3
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2
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2.0k
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Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by ▴ 40
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9
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6.8k
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unable to update mgcv package
mgcv snprelate
updated 9.1 years ago by 25k • written 9.1 years ago by • 0
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4
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2.7k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 9.2 years ago by ▴ 30 • written 9.2 years ago by ▴ 10
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0
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1.1k
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RADseq chromosomes unknown
snprelate RADseq Stacks
9.2 years ago clive.darwell • 0
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0
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2.1k
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GWASTools
Organism GWASTools Organism GWASTools SNPRelate
11.9 years ago Stephanie M. Gogarten ▴ 890
22 results • Page 1 of 1
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Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
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Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
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