Showing : snpstats • reset
1
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1.6k
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.2 years ago Anastasiia • 0
0
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0
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901
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.8 years ago Amber • 0
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0
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772
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
5.0 years ago schandry • 0
0
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1
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1.1k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.6 years ago GENOMIC_region • 0
1
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1
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1.4k
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reading ped error when using the snpStats library
snpstats ped file R
7.3 years ago kzelaya2 ▴ 10
0
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0
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1.2k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.9 years ago natalie.jean.mcdonald • 0
1
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0
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1.3k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
8.7 years ago carlos.ruiz • 0
1
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1
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1.8k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.2 years ago TimothéeFlutre ▴ 80
1
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2
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2.1k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
10.0 years ago remi.tournebize ▴ 10
0
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1
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1.4k
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snp analysis GWAS
snpstats
updated 10.2 years ago by ★ 13k • written 10.2 years ago by • 0
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0
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1.9k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.2 years ago vickygarfield87 • 0
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1.2k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.2 years ago vickygarfield87 • 0
0
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1
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1.9k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.7 years ago by 6.7k • written 10.7 years ago by ★ 13k
0
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3
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1.9k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 11.0 years ago by 6.7k • written 11.0 years ago by ▴ 50
0
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1
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1.8k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.1 years ago David Winsemius ▴ 40
0
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0
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2.2k
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Plink Data for Fst Calculations
snpStats snpStats
11.2 years ago Voke AO ▴ 760
0
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3
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1.3k
views
SNPstats package bug report
snpStats snpStats
11.2 years ago Guest User ★ 13k
0
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0
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2.0k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.3 years ago Stephanie M. Gogarten ▴ 890
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0
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1.2k
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snpStats Fst Implementation
snpStats snpStats
11.4 years ago Voke AO ▴ 760
0
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1
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1.6k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 10
0
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1
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1.4k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 60
0
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0
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1.2k
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statistics from snpStats objects
SNP snpStats SNP snpStats
12.6 years ago james power ▴ 10
0
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3
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3.2k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.7 years ago by 6.7k • written 12.7 years ago by ▴ 20
0
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4
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1.8k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.9 years ago by ▴ 20 • written 12.9 years ago by ▴ 30
0
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2
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1.6k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.3 years ago by 25k • written 13.3 years ago by ★ 4.2k
25 results • Page 1 of 1
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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