Showing : snpstats • reset
0
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4
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1.5k
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snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ▴ 30
0
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3
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1.2k
views
SNPstats package bug report
snpStats snpStats
10.5 years ago Guest User ★ 13k
0
votes
3
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2.8k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 20
0
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3
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1.7k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.3 years ago by 6.7k • written 10.3 years ago by ▴ 50
0
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2
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1.4k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 12.6 years ago by 25k • written 12.6 years ago by ★ 4.2k
1
vote
2
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1.8k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.2 years ago remi.tournebize ▴ 10
1
vote
2
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1.3k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
2.5 years ago • updated 2.4 years ago Anastasiia • 0
0
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1
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1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
1
vote
1
reply
1.6k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
8.5 years ago TimothéeFlutre ▴ 80
0
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1
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1.3k
views
snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.3 years ago by 6.7k • written 11.3 years ago by ▴ 60
1
vote
1
reply
1.3k
views
reading ped error when using the snpStats library
snpstats ped file R
6.6 years ago kzelaya2 ▴ 10
0
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1
reply
937
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
5.9 years ago GENOMIC_region • 0
0
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1
reply
1.3k
views
snp analysis GWAS
snpstats
updated 9.5 years ago by ★ 13k • written 9.5 years ago by • 0
0
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1
reply
1.4k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.2 years ago by 6.7k • written 11.2 years ago by ▴ 10
0
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1
reply
1.6k
views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.0 years ago by 6.7k • written 10.0 years ago by ★ 13k
0
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0
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610
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.3 years ago schandry • 0
0
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0
replies
1.8k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
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0
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1.1k
views
snpStats Fst Implementation
snpStats snpStats
10.7 years ago Voke AO ▴ 760
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0
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2.0k
views
Plink Data for Fst Calculations
snpStats snpStats
10.4 years ago Voke AO ▴ 760
0
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0
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1.0k
views
statistics from snpStats objects
SNP snpStats SNP snpStats
11.9 years ago james power ▴ 10
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0
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1.0k
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
9.5 years ago vickygarfield87 • 0
0
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0
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1.7k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
9.5 years ago vickygarfield87 • 0
0
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0
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741
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.1 years ago Amber • 0
1
vote
0
replies
1.1k
views
Error when computing ld with snpStats in big samples
software error snpstats `ld
7.9 years ago carlos.ruiz • 0
0
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0
replies
1.1k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.2 years ago natalie.jean.mcdonald • 0
25 results • Page 1 of 1
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Marcel Ramos 690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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